View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_low_18 (Length: 231)
Name: NF14866_low_18
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 47422260 - 47422471
Alignment:
| Q |
1 |
gaggaagaggcgccgtgatagatttgaaatgttgaagagtttttgtgagacagtggttaacaaaataatagcacaacaagaagaaatacacaataagcta |
100 |
Q |
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| T |
47422260 |
gaggaagaggcgccgtgatagatttgaaatgttgaagagtttttgtgagacagtggttaataaaataatagcacaacaagaagaaatacacaataagcta |
47422359 |
T |
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| Q |
101 |
cttgaagacatgctcaaaagagatcaagaaaagcttgatagagaggaaacatggaaaaaacaagagattgaaaggatgaacatgatggtacaagaacaac |
200 |
Q |
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| T |
47422360 |
cttgaagacatgctcaaaagagatcaagaaaagcttgatagagaggaaacatggaaaaaacaagagattgaaaggatgaacatgatggtacaagaacaac |
47422459 |
T |
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| Q |
201 |
aagctattgcaa |
212 |
Q |
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|||||||||||| |
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| T |
47422460 |
aagctattgcaa |
47422471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 36128126 - 36127974
Alignment:
| Q |
16 |
tgatagatttgaaatgttgaagagtttttgtgagacagtggttaacaaaataatagcacaacaagaagaaatacacaataagctacttgaagacatgctc |
115 |
Q |
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| T |
36128126 |
tgatagatttgaagtgtttaagggtttttgtgagagtgttgtaaagaaaatgatggatcaacaagaagaaatgcacaacaagcttattgaagatatggtt |
36128027 |
T |
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| Q |
116 |
aaaagagatcaagaaaagcttgatagagaggaaacatggaaaaaacaagagat |
168 |
Q |
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| T |
36128026 |
aaaagagatgaagagaagtttagtagagaagaagcttggaagaaacaagagat |
36127974 |
T |
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