View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_low_2 (Length: 479)
Name: NF14866_low_2
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 13 - 461
Target Start/End: Complemental strand, 4612624 - 4612174
Alignment:
| Q |
13 |
attattctacaactgtttcaaacaagatttaatttatcctaacagttaaaaagttaaacttaaa-tcactgaattaatgcctcttgacaaatgttcaaat |
111 |
Q |
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| T |
4612624 |
attattctacaactgtttcaaacaagatttaatttatcctaaaagttaaaaagttaaacttaaaatcactgaattaatgcctcttgacaaatgttcaaat |
4612525 |
T |
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| Q |
112 |
ttgaatctttgtttaaaattgagttagctaatgattttcatgtcttcttgctaaaaacatatatgtgctcatgacatccacaattgagtcttgttcctta |
211 |
Q |
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| T |
4612524 |
ttgaatctttgtttaaaattgagttagctaatgattttcatgtcttcttgctaaaaacatatatgtgctcatgacatccacaattgagtcttgttcctta |
4612425 |
T |
|
| Q |
212 |
acaaagggtttt-gttcttttgcagtaatcattaattagtgactttgcgtaaatagtaattctagtagtgtacaatgtacatatatgttttcaaaatatc |
310 |
Q |
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| T |
4612424 |
acaaagggtttttgttcttttgcagtaatcattaattagtgactttgcgtaaatagtaattctagtagtgtacaatgtacatatatgttttcaaaataac |
4612325 |
T |
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| Q |
311 |
gatatgattgtcttttagttttaaaaatgtatatgtctactagaaaccaaatataatcatatgtgctatatgattatgcaacatggaagagattaaaagg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4612324 |
gatatgattgtcttttagttttaaaaatgtatatgtctactagaaaccaaatataatcatatgtgctatatgattatgcaacatggaagagattaaaagg |
4612225 |
T |
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| Q |
411 |
aaaagaacagtatgaacgaaataggcatgatatgtcaaaggttgttggaat |
461 |
Q |
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| T |
4612224 |
aaaaaaacagtatgaacgaaataggcatgatatgtcaaaggttgttggaat |
4612174 |
T |
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