View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_low_3 (Length: 459)
Name: NF14866_low_3
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 43396648 - 43396206
Alignment:
| Q |
1 |
ccaccaccatcattctctttctgtctataacccaatagccatgcatgacaaatagcagccaccatcgatgccgtacctgcaccacatacaaataaattcc |
100 |
Q |
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| T |
43396648 |
ccaccaccatcattctctttctgtctataacccaatagccatgcatggcaaatagcagccaccatcgacgccgtacctgcaccacatacaaataaattcc |
43396549 |
T |
|
| Q |
101 |
acactttccaacactcccaaaatcaaatcaacaaaacaaattcagtccatgcttggtctcacgtgagtttatcaaaatcacagcgagctaccgtagcttt |
200 |
Q |
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| T |
43396548 |
acactttccaacactcccaaaatcaaatcaacaaaacaaattcagtccatgtttggtctcacgtgagtttatcaaaatcacagtgagctaccgtagcttt |
43396449 |
T |
|
| Q |
201 |
tgaaaattataatgctcacagtgattccgacaaatttagcatgatagaaaacatgcattcaagtttttcactaactgtttaaatgcccagaaagcacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396448 |
tgaaaattataatgctcacagtgattccgacaaatttagcatgatagaaaacatgcattcaagtttttcactaactgtttaaatgcccagaaagcacaat |
43396349 |
T |
|
| Q |
301 |
tttgatttcgacatttgtatgaagctctcccttcgagaatctctgaaacaaattcctctgctctttcaaaaacccattaagactatactcctccgtagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396348 |
tttgatttcgacatttgtatgaagctctcccttcgagaatctctgaaacaaattcctctgctctttcaaaaacccattaagactatactcctccgtagtt |
43396249 |
T |
|
| Q |
401 |
tcttcttcttccttcacaaaattcttcaccggagctatcttct |
443 |
Q |
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| T |
43396248 |
tcttcttcttccttcacaaaattcttcaccggagctatcttct |
43396206 |
T |
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