View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_low_5 (Length: 419)
Name: NF14866_low_5
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 20084538 - 20084218
Alignment:
| Q |
1 |
cgttttctctattccatcagtttgaatgannnnnnnnattatacgtttattttaaaccattaataaattgagtaaattacactccnnnnnnnnaagaaat |
100 |
Q |
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| T |
20084538 |
cgttttctctattccatcagtttgaatgattttttt-attatacgtttattttaaaccattaataaattaagtaaattacactccttttttctaagaaat |
20084440 |
T |
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| Q |
101 |
gctgcaattacactcatgtggtactctaattttgtctagccannnnnnnaaaaataaaataaatgacaatttagattttatcttgnnnnnnn---ctatt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20084439 |
gctgcaattacactcatgtggtactctaattttgtctagccattttttaaaaaataaaataaatgacaatttagattttatcttgttttttttttctatt |
20084340 |
T |
|
| Q |
198 |
caatccgtttctctttaaccgtggtttaagaagagtaaactcaaattaagaaatgaannnnnnnaatggttttttcaattatagacttatatttttaatg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
20084339 |
caatccgtttctctttaaccgtggtttaagaagagtaaactcaaattaagaaatgaatttttttaatggttttttcaattataaacttatatttttaatg |
20084240 |
T |
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| Q |
298 |
catcaataaatacctgtatttt |
319 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
20084239 |
catcaataaatacctgtatttt |
20084218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 318 - 419
Target Start/End: Complemental strand, 20073492 - 20073389
Alignment:
| Q |
318 |
ttcttctaattaggtcatatcaacggtgtcgaatgtgggaaactagttat-cccatcttttctatcttctgat-aagtcatagtgaaatgaagtaagata |
415 |
Q |
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| T |
20073492 |
ttcttctgattaggtcatatcaacggtgtcgaatgtgggaaagtagttatccccgtcttttctatcttctgatcaagtcatactgaaatgaagtaagata |
20073393 |
T |
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| Q |
416 |
agtt |
419 |
Q |
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|||| |
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| T |
20073392 |
agtt |
20073389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 20084044 - 20083962
Alignment:
| Q |
318 |
ttcttctaattaggtcatatcaacggtgtcgaatgtgggaaactagttat---cccatcttttctatcttctgataagtcata |
397 |
Q |
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| T |
20084044 |
ttcttgtaattaggtcatatcaacggtgtcgaatgtgggaaactagttatatccccatcttttctatcttctgataagtcata |
20083962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 326 - 419
Target Start/End: Complemental strand, 20070897 - 20070802
Alignment:
| Q |
326 |
attaggtcatatcaacggtgtcgaatgtgggaaactagttat-cccatcttttctatcttctgat-aagtcatagtgaaatgaagtaagataagtt |
419 |
Q |
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| T |
20070897 |
attaggtcatatcaatggtgtcgaatgtgggaaactagttatccccatcttttctaatttctgatcaagtaatagtgaaatgaagtaagataagtt |
20070802 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 20078225 - 20078164
Alignment:
| Q |
193 |
ctattcaatccgtttctctttaaccgtggtttaagaagagtaaactcaaattaagaaatgaa |
254 |
Q |
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| T |
20078225 |
ctattcaatccgtttctctttaaccgtggtttaagaagagttaactcaaattaagaaatgaa |
20078164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 319
Target Start/End: Complemental strand, 20067119 - 20066995
Alignment:
| Q |
193 |
ctattcaatccgtttctctttaaccgtggtttaagaagagtaaactcaaattaagaaatgaannnnnnnaatggttttttcaattatagacttatatttt |
292 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||| ||||| |||||| ||| |
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| T |
20067119 |
ctattcaatccgtttctctttaaccgtagtttaagaagagtaaactcaaattaagagatgaaactttttaatagttttttctattattgactta---ttt |
20067023 |
T |
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| Q |
293 |
taatgcatcaat-aaatacctgtatttt |
319 |
Q |
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|||| ||||| | ||||||||||||||| |
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| T |
20067022 |
taatccatcactaaaatacctgtatttt |
20066995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 20071198 - 20071140
Alignment:
| Q |
193 |
ctattcaatccgtttctctttaaccgtggtttaagaagagtaaactcaaattaagaaat |
251 |
Q |
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| T |
20071198 |
ctattcaatccatttctctttaaccgtggtttaagaagagtaaactcaaatcaagaaat |
20071140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20115796 - 20115714
Alignment:
| Q |
1 |
cgttttctctattccatcagtttgaatgannnnnnnnattatacgtttattttaaaccattaataaattgagtaaattacactcc |
85 |
Q |
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| T |
20115796 |
cgttttctctattccatcagtttgaatgatttcttt--tcatacgtttattttaatccatttataaattgattaaattacactcc |
20115714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 20095996 - 20095915
Alignment:
| Q |
318 |
ttcttctaattaggtcatatcaacggtgtcgaatgtgggaaactagttatcc-catcttttctatcttctga-taagtcata |
397 |
Q |
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||||||| ||||||||||| ||||| ||| ||| || |||||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
20095996 |
ttcttcttgttaggtcatattaacggcctcgtatgaggcaaactagtcatcctcatcttttctatcttctgattaagtcata |
20095915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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