View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14866_low_8 (Length: 368)

Name: NF14866_low_8
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14866_low_8
NF14866_low_8
[»] chr5 (6 HSPs)
chr5 (261-350)||(43586458-43586547)
chr5 (266-351)||(10360377-10360462)
chr5 (266-351)||(33451288-33451373)
chr5 (269-313)||(37923495-37923539)
chr5 (269-313)||(38943094-38943138)
chr5 (267-351)||(42249577-42249661)
[»] chr8 (4 HSPs)
chr8 (266-351)||(24581120-24581204)
chr8 (268-351)||(33112291-33112374)
chr8 (266-317)||(45375156-45375207)
chr8 (269-313)||(43139156-43139200)
[»] chr2 (2 HSPs)
chr2 (278-350)||(13511644-13511716)
chr2 (266-351)||(6605548-6605632)
[»] chr1 (4 HSPs)
chr1 (266-351)||(51878516-51878601)
chr1 (266-317)||(10890632-10890683)
chr1 (266-317)||(52128942-52128993)
chr1 (269-313)||(26244482-26244526)
[»] chr7 (2 HSPs)
chr7 (266-351)||(23089993-23090078)
chr7 (266-314)||(47077138-47077186)
[»] chr3 (3 HSPs)
chr3 (267-315)||(53829274-53829322)
chr3 (266-351)||(44449966-44450051)
chr3 (269-313)||(34266842-34266886)
[»] chr6 (1 HSPs)
chr6 (266-351)||(34993270-34993355)
[»] chr4 (3 HSPs)
chr4 (269-313)||(29893918-29893962)
chr4 (269-313)||(33395016-33395060)
chr4 (269-313)||(40260574-40260618)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 261 - 350
Target Start/End: Complemental strand, 43586547 - 43586458
Alignment:
Q  261 aggttacgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaat 350  Q
    |||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||||| ||||    
T  43586547 aggtgacgtttagcatgggaaaattgtgatcttttcccatcttaggtcaatttaacatgagcctttgatttaatattaacaaataccaat 43586458  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 10360377 - 10360462
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    |||||||||||||| ||||||  || |||||||||||||| ||||||||||| |   | |||||||||| |||||| | |||||||    
T  10360377 acgtttagcatgggaaaattggcatatttccccatcttaggtcaatttaacaagggccattgatttaatgttaacagagatcaatg 10360462  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 33451288 - 33451373
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    ||||||||||||| |||||||  || |||| ||||||||| ||||||||||| |   | |||||||||| |||||| | |||||||    
T  33451288 acgtttagcatggagaaattggcatatttctccatcttaggtcaatttaacaagggccattgatttaatgttaacagagatcaatg 33451373  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 37923539 - 37923495
Alignment:
Q  269 tttagcatggggaaattgtgatctttccccatcttagatcaattt 313  Q
    |||||||||||| |||||| |  ||||||||||||||||||||||    
T  37923539 tttagcatggggcaattgtcaaatttccccatcttagatcaattt 37923495  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 38943094 - 38943138
Alignment:
Q  269 tttagcatggggaaattgtgatctttccccatcttagatcaattt 313  Q
    |||||||||||| ||||||||  || |||||||||||||||||||    
T  38943094 tttagcatggggcaattgtgaaattgccccatcttagatcaattt 38943138  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 351
Target Start/End: Original strand, 42249577 - 42249661
Alignment:
Q  267 cgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    ||||||||||||| ||||||  || ||| || | ||||| ||||||||||| |  || ||||||||||||||| |||||| ||||    
T  42249577 cgtttagcatgggcaaattgatatattttcctaacttaggtcaatttaacaagggtcattgatttaatattaataaatattaatg 42249661  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 24581204 - 24581120
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    |||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  24581204 acgtttagcatgag-aaattgtgatctttccctatcttaggtcaatttaacatgaacctttgatttaatattaacaaatagcaatg 24581120  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 33112291 - 33112374
Alignment:
Q  268 gtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    |||||||||||||||||||  || ||| || ||||||| ||||||||| | ||||| ||||||||||||||  |||| ||||||    
T  33112291 gtttagcatggggaaattggcatattttcctatcttaggtcaatttaataagaatcattgatttaatattagtaaatgtcaatg 33112374  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 45375156 - 45375207
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaaca 317  Q
    |||||||||||||||||||||  || |||| ||||||||| |||||||||||    
T  45375156 acgtttagcatggggaaattgacatatttctccatcttaggtcaatttaaca 45375207  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 43139156 - 43139200
Alignment:
Q  269 tttagcatggggaaattgtgatctttccccatcttagatcaattt 313  Q
    |||||||||||| ||||||||  || |||||||||||||||||||    
T  43139156 tttagcatggggcaattgtgaaattgccccatcttagatcaattt 43139200  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 13511716 - 13511644
Alignment:
Q  278 gggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaat 350  Q
    ||||||||||||||||| |||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  13511716 gggaaattgtgatcttttcccatcttaagtcaatttaacatgagtctttgatttaatattaacaaatatcaat 13511644  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 6605548 - 6605632
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||| ||||||| |||||    
T  6605548 acgtttagtatggggaaattgtcatctttccctatcttagatcaatttaacatgagcctttgatttaatatt-acaaataccaatg 6605632  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 51878516 - 51878601
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||   |||||||||||||||||||||| |||||    
T  51878516 acgtttagcatggggagattgtgatctttccccatctttggtcaatttaatatgagcttttgatttaatattaacaaataccaatg 51878601  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 10890632 - 10890683
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaaca 317  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  10890632 acgtttagcatgggaaaattgtgatctttccccatcttaggtcaatttaaca 10890683  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 52128942 - 52128993
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaaca 317  Q
    |||||||||||||| ||||||  || |||| |||||||||||||||||||||    
T  52128942 acgtttagcatgggaaaattggcatatttctccatcttagatcaatttaaca 52128993  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 26244526 - 26244482
Alignment:
Q  269 tttagcatggggaaattgtgatctttccccatcttagatcaattt 313  Q
    |||||||||||| ||||||||  || |||||||||||||||||||    
T  26244526 tttagcatggggtaattgtgaaattgccccatcttagatcaattt 26244482  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 23089993 - 23090078
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    ||||||||||||||  |||||| |||||   ||||||| | ||||||||||| || || ||||||||||||||| ||||| |||||    
T  23089993 acgtttagcatgggacaattgtcatcttaatccatcttgggtcaatttaacaagagtcattgatttaatattaataaataccaatg 23090078  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 47077138 - 47077186
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaattta 314  Q
    |||||||||||||||||||||  || |||||| ||||||| ||||||||    
T  47077138 acgtttagcatggggaaattgacatatttccctatcttaggtcaattta 47077186  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 53829322 - 53829274
Alignment:
Q  267 cgtttagcatggggaaattgtgatctttccccatcttagatcaatttaa 315  Q
    ||||||||||||||||||||  || |||| |||||||||||||||||||    
T  53829322 cgtttagcatggggaaattggcatatttctccatcttagatcaatttaa 53829274  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 44449966 - 44450051
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    |||||||||||||| || |||  || |||||||| ||||||||||||||||| |   | ||||||||||| ||| ||||| |||||    
T  44449966 acgtttagcatgggcaagttgatatatttccccaacttagatcaatttaacaagggccattgatttaatactaataaataccaatg 44450051  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 34266842 - 34266886
Alignment:
Q  269 tttagcatggggaaattgtgatctttccccatcttagatcaattt 313  Q
    ||||||||||| ||||||| |  ||||||||||||||||||||||    
T  34266842 tttagcatgggcaaattgtcaaatttccccatcttagatcaattt 34266886  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 34993355 - 34993270
Alignment:
Q  266 acgtttagcatggggaaattgtgatctttccccatcttagatcaatttaacatgaatctttgatttaatattaacaaatatcaatg 351  Q
    |||||||| ||| | ||||||  || |||||||| ||||||||||||||||| |   | ||||||||||| ||| |||||||||||    
T  34993355 acgtttagtatgagcaaattgatatatttccccaacttagatcaatttaacaagggccattgatttaatactaataaatatcaatg 34993270  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 29893962 - 29893918
Alignment:
Q  269 tttagcatggggaaattgtgatctttccccatcttagatcaattt 313  Q
    |||||||||||| ||||||||  || |||||||||||||||||||    
T  29893962 tttagcatggggcaattgtgaaattgccccatcttagatcaattt 29893918  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 33395060 - 33395016
Alignment:
Q  269 tttagcatggggaaattgtgatctttccccatcttagatcaattt 313  Q
    |||||||||||| ||||||||  || |||||||||||||||||||    
T  33395060 tttagcatggggcaattgtgaaattgccccatcttagatcaattt 33395016  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 40260574 - 40260618
Alignment:
Q  269 tttagcatggggaaattgtgatctttccccatcttagatcaattt 313  Q
    |||||||||||| ||||||||  || |||||||||||||||||||    
T  40260574 tttagcatggggcaattgtgaaattgccccatcttagatcaattt 40260618  T

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