View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14867_high_3 (Length: 325)
Name: NF14867_high_3
Description: NF14867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14867_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 43503994 - 43504304
Alignment:
| Q |
1 |
aaaccacttgacccaagaatgcaataaaccaaacaaaccagaaaacttaacaagcaaacccgaaataattaaagacgagagaaggaagataacaccaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43503994 |
aaaccacttgacccaagaatgcaataaaccaaacaaaccagaaaacttaacaagcaaacccgaaacaattaaagacgagagaaggaagataacaccaata |
43504093 |
T |
|
| Q |
101 |
attcacgtggtttagtcttgatacctactccacgggagagtgagagaagcaagttttcactatgatgaggaacaatacatgatcaagtcattgtcatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43504094 |
attcacgtggtttagtcttgatacctactccacgggagagtgagagaagcaagttttcactatgatgaggaacaatacaagatcaagtcattgtcatagc |
43504193 |
T |
|
| Q |
201 |
gtttttctttg-cccctaccaataacccaattgagaaatagttacaagaatctcaacgtctttcccactctatttttacacaattctcttttatctctct |
299 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43504194 |
gtttttctttgccccctaccaataacccaattgagaaacagttacaagaatttcaacgtctttcccactctatttttacacaattctcttttatctctct |
43504293 |
T |
|
| Q |
300 |
aattctctttt |
310 |
Q |
| |
|
||||||||||| |
|
|
| T |
43504294 |
aattctctttt |
43504304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University