View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14867_low_3 (Length: 567)
Name: NF14867_low_3
Description: NF14867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14867_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 10351174 - 10350744
Alignment:
| Q |
18 |
acttgcacacaaaatttttaataaagaaattattctttaccctccattttatggatgtgtatccgtcaagtggtattagagtttggatcttagagttgtt |
117 |
Q |
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| T |
10351174 |
acttgcacacaaaatttttaataaagaaattattctttaccctccattttatggatgtgtatccgtcaagtggtattagagt-----------agttgtt |
10351086 |
T |
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| Q |
118 |
gaggaaaatcatgaagaacggcttcaagttttcttagaagtttgttaaaaagataattagatcttgaaatatcttttactaaaataattgttggttggtt |
217 |
Q |
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| T |
10351085 |
gaggaaaatcatgaaga-cgacttcaagtttccttagaagtttgttaaaaagataattaaatcttgaaatatcttttactaaaataattgttggttggtt |
10350987 |
T |
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| Q |
218 |
atttaggtaatggaataatgccacacatcgtaatggttactgttgttaagcaccttacaccagttcttgaaacatagaaagaatccattggaatcaaaat |
317 |
Q |
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| T |
10350986 |
atttaggtaatggaataatgccacacatcgtaatggttactgttgttaagcaccttacaccagttcttgagacatagaaagaatccattggaaacaaaat |
10350887 |
T |
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| Q |
318 |
attttccctgcattgtaaactagaacaattttgctcgcttaacaaaatcttttaaatgattataaagtttctggtacgattatattttgaagtgaaaagg |
417 |
Q |
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| T |
10350886 |
attttccctgcattgtaaactagaacaattttgctcgcttgacaaaatcttttaaa---------------tggtacgattatattttgaagtgaaaagg |
10350802 |
T |
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| Q |
418 |
atgaaataaatatgataagctctctacgttatttttgttgataattcattggtgagat |
475 |
Q |
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| T |
10350801 |
atgaaataaatatgataagctctctacgttatttttgttgataattcattggtgagat |
10350744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 10355589 - 10355476
Alignment:
| Q |
108 |
tagagttgttgaggaaaatcatgaagaacggcttcaagttttcttagaagtttgttaaaaagataattagatcttgaaatatcttttactaaaataattg |
207 |
Q |
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| T |
10355589 |
tagagttgttgaggaaaatcatgaaga-cgacttcaagtttgcttagatgtttgttagaaagataattagatctggaaatatctttaactaaaataattg |
10355491 |
T |
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| Q |
208 |
-ttggttggttattt |
221 |
Q |
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| T |
10355490 |
tttggttggttattt |
10355476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 288 - 412
Target Start/End: Complemental strand, 10355366 - 10355255
Alignment:
| Q |
288 |
aacatagaaagaatccattggaatcaaaatattttccctgcattgtaaactagaacaattttgctcgcttaacaaaatcttttaaatgattataaagttt |
387 |
Q |
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| T |
10355366 |
aacatagaaagaatccattggaatcaaaatattttccctgcactgtaaactagaactattttg-------------atcttttaaatggttataaagttt |
10355280 |
T |
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| Q |
388 |
ctggtacgattatattttgaagtga |
412 |
Q |
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| T |
10355279 |
ctggcacgattattttttgaagtga |
10355255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 497 - 554
Target Start/End: Complemental strand, 10350745 - 10350688
Alignment:
| Q |
497 |
attgacataaaactttctttaatttttctcttaaattacatgaggattagccctatta |
554 |
Q |
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| T |
10350745 |
attgacacaaaactttctttaatttttctcttaaattacatgaggattagccctatta |
10350688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 10355258 - 10355190
Alignment:
| Q |
469 |
gtgagatcttgatttagtgaaatacaatattgacataaaactttctttaatttttctcttaaattacat |
537 |
Q |
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| T |
10355258 |
gtgaggtcttgatttagtgaaatataatattgccacaaaattttcttttatttttctcttaaactacat |
10355190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 10355462 - 10355414
Alignment:
| Q |
207 |
gttggttggttatttaggtaatggaataatgccacacatcgtaatggtt |
255 |
Q |
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| T |
10355462 |
gttggttggttatttaggtaatggaataatgccacatctcgtaatggtt |
10355414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 10362042 - 10362001
Alignment:
| Q |
462 |
ttcattggtgagatcttgatttagtgaaatacaatattgaca |
503 |
Q |
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| T |
10362042 |
ttcattggttacgtcttgatttagtgaaatacaatattgaca |
10362001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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