View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14867_low_8 (Length: 253)
Name: NF14867_low_8
Description: NF14867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14867_low_8 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 4130543 - 4130778
Alignment:
| Q |
18 |
agggttggatttgctttggggatcgcaagagggttggtgtatttacatgaagagtgtgacactcctatcattcattgcgacataaagcctcaaaatatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130543 |
agggttggatttgctttggggatcgcaagagggttggtgtatttacatgaagagtgtgacactcctatcattcattgcgacataaagcctcaaaatatac |
4130642 |
T |
|
| Q |
118 |
tcatagatgagtattttacggcaaagatctctgactttggtttggccaagttgttgttggctgatcaaagtagaacaaatacaatgatccgaggaacgcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4130643 |
tcatagatgagtattttacggcaaagatctctgactttggtttggccaagttgttgttggctgatcaaagtagaacaaatacaatggtccgaggaacgcg |
4130742 |
T |
|
| Q |
218 |
tggatatgtagctcctgaattgttcaagaatgtccc |
253 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| |
|
|
| T |
4130743 |
gggatatgtggctcctgaatggttcaagaatgtccc |
4130778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 4107366 - 4107594
Alignment:
| Q |
22 |
ttggatttgctttggggatcgcaagagggttggtgtatttacatgaagagtgtgacactcctatcattcattgcgacataaagcctcaaaatatactcat |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4107366 |
ttggatttgctttggggattgcaagagggttggtgtatttacatgaagagtgtgacactcccatcattcattgtgacataaagcctcaaaatatactcat |
4107465 |
T |
|
| Q |
122 |
agatgagtattttacggcaaagatctctgactttggtttggccaagttgttgttggctgatcaaagtagaacaaatacaatgatccgaggaacgcgtgga |
221 |
Q |
| |
|
||||||||| || || |||||||| |||||||| || ||||| || ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
4107466 |
agatgagtacttcacagcaaagatttctgacttcggattggctaaattgttgttggccgatcaaagtagaacaaaaaccatgatccgaggaacgcgagga |
4107565 |
T |
|
| Q |
222 |
tatgtagctcctgaattgttcaagaatgt |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
4107566 |
tatgtagctcctgaatggttcaagaatgt |
4107594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 3035753 - 3035818
Alignment:
| Q |
54 |
gtgtatttacatgaagagtgtgacactcctatcattcattgcgacataaagcctcaaaatatactc |
119 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
3035753 |
gtgtatttacatgaagagtgcatcactaggatcattcattgtgacataaagcctcaaaacatactc |
3035818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 47068727 - 47068776
Alignment:
| Q |
63 |
catgaagagtgtgacactcctatcattcattgcgacataaagcctcaaaa |
112 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
47068727 |
catgaagagtgtgatgctccaatcattcattgcgacttaaagcctcaaaa |
47068776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University