View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_high_13 (Length: 269)
Name: NF14868_high_13
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 52968445 - 52968209
Alignment:
| Q |
15 |
atactcaaataatagtacattgcatcagtctaagctacattataatggacagtaattaaaaagaacttccatgaaaggctaaccagaaccaggatctaaa |
114 |
Q |
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| T |
52968445 |
atactcaaataatagtacattgcatcagtctaagctacattataatggacagtaattaaatagaacttccatgaaaggctaaccagaaccaggatctaaa |
52968346 |
T |
|
| Q |
115 |
cttgatcacaatat----atatttcatttgtttaatagaattaattttaacaaccaacattttctataatttttagtttaacacttgtatataaccatca |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52968345 |
cttgatcacaatatatatatatttcatttgtttaatagaattaattttaacaaccaacattttctataatttttagtttaacacttgtatataaccatc- |
52968247 |
T |
|
| Q |
211 |
atataatttcacaagtttgaatgatctgcaagatatataagt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52968246 |
----aatttcacaagtttgaatgatctgcaagatatataagt |
52968209 |
T |
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