View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_high_5 (Length: 428)
Name: NF14868_high_5
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 31 - 412
Target Start/End: Complemental strand, 10159231 - 10158850
Alignment:
| Q |
31 |
tgtttgcaaatattggagggtggatagtagacacattagttagcaaaggtgtttccataacaactgttcgaaaggtatgataaccacttgttactaaaat |
130 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10159231 |
tgtttgcaaatattggagggtggatagcagacacattagttagcaaaggtgtttccataacaactgttcgaaaggtatgataaccacttgttactaaaat |
10159132 |
T |
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| Q |
131 |
attgtcatgcctgatcaacaactattacaaataatgttcttaacagaatgcggtgaaggaaattgttaggattcatttcactatttgaaattattctgct |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10159131 |
attgtcatgcctgatcaacaactattacaaataatgttcttaacagaatgcggtgaaggaaattgttaggattcatttcactctttgaaattattctgct |
10159032 |
T |
|
| Q |
231 |
cttaatatttatggataatatggcagatcatgcaatcgatcggatttctaggtcctgccttttttcttacgcaactgagccatgtcaaaacacccgccat |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10159031 |
attaatatttatggataatatggcagatcatgcaatcgatcggatttctaggtcctgccttttttcttacgcaactgagccatgtcaaaacacccgccat |
10158932 |
T |
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| Q |
331 |
ggcagtattgtgcatggcatgcagtcaggtttgagctagatcaacatttcttagtgtgaattcctcaagttttggcactttt |
412 |
Q |
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| T |
10158931 |
ggcagtattgtgcatggcatgcagtcaggtttgagctagatcaacatttcttagtgtgaattcctcaagttttggcactttt |
10158850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 31 - 412
Target Start/End: Original strand, 29402611 - 29402993
Alignment:
| Q |
31 |
tgtttgcaaatattggagggtggatagtagacacattagttagcaaaggtgtttccataacaactgttcgaaaggtatgataaccacttgttactaaaat |
130 |
Q |
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| T |
29402611 |
tgtttgcaaatattggagggtggatagcagacacattagttagcaaaggtgtttccataacaactgttcgaaaggtatgataaccacttgttactaaaat |
29402710 |
T |
|
| Q |
131 |
attgtcatgcctgatcaacaactatt-acaaataatgttcttaacagaatgcggtgaaggaaattgttaggattcatttcactatttgaaattattctgc |
229 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29402711 |
attgtcatgcctgatcaacaactatttacaaataatgttcttaacagaatgtggtgaaggaaattgttaggattcatttcactctttgaaattattctgc |
29402810 |
T |
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| Q |
230 |
tcttaatatttatggataatatggcagatcatgcaatcgatcggatttctaggtcctgccttttttcttacgcaactgagccatgtcaaaacacccgcca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29402811 |
tcttaatatttatggataatatggcagatcatgcaatcgatcggatttctaggtcctgccttttttcttacgcaactgagccatgtcaaaacacccgcca |
29402910 |
T |
|
| Q |
330 |
tggcagtattgtgcatggcatgcagtcaggtttgagctagatcaacatttcttagtgtgaattcctcaagttttggcactttt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29402911 |
tggcagtattgtgcatggcatgcagtcaggtttgagctagatcaacatttcttagtgtgaattcctcaagttttggcactttt |
29402993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 11317943 - 11317830
Alignment:
| Q |
251 |
tggcagatcatgcaatcgatcggatttctaggtcctgccttttttcttacgcaactgagccatgtcaaaacacccgccatggcagtattgtgcatggcat |
350 |
Q |
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||||||||||||||||||||||| ||| | |||||||| ||||||||||| || || ||| |||||| |||||||||||||||||||||||| ||||| | |
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| T |
11317943 |
tggcagatcatgcaatcgatcgggtttttgggtcctgcattttttcttacacagctaagcaatgtcagaacacccgccatggcagtattgtgtatggctt |
11317844 |
T |
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| Q |
351 |
gcagtcaggtttga |
364 |
Q |
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|||||||||||||| |
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| T |
11317843 |
gcagtcaggtttga |
11317830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 11318230 - 11318158
Alignment:
| Q |
33 |
tttgcaaatattggagggtggatagtagacacattagttagcaaaggtgtttccataacaactgttcgaaagg |
105 |
Q |
| |
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||||||||||| ||||| ||||||| |||||| | || ||||||||| |||||||||||||||||||||||| |
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| T |
11318230 |
tttgcaaatataggaggttggatagctgacacacttgtgagcaaaggtttttccataacaactgttcgaaagg |
11318158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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