View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14868_high_6 (Length: 409)
Name: NF14868_high_6
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 16967793 - 16967406
Alignment:
| Q |
1 |
atcagataaagagaaaatgacggagaataaaggaagggattataaaggtgtagctaacatccctattgagaagaagatgaagaaggaatctattgataag |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16967793 |
atcaaataaagagaaaatgacggagaataaaggaagggattataaaggtgtagctaacatccctattgagaagaagaagaagaaggaatctattgataac |
16967694 |
T |
|
| Q |
101 |
agttgtttgaatcaaagcgtcaaaagctcgcattttacgccaaaggagttgtgttcactcgaactccttgctcaatgctattgggaaagaaagaatacca |
200 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16967693 |
agttgtttgaatcaaagcgtcaaaagcccacattttacgccaaaggagttgcgttcactcgaactccttgctcaatgctattgggaaagaaagaatacca |
16967594 |
T |
|
| Q |
201 |
tgaacaaagattcaattgtgttgaaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctgtggacacgcctcatgaacggat |
300 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16967593 |
tgaacaaagattcaattgtgttggaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctgtggacacacctcatgaacggat |
16967494 |
T |
|
| Q |
301 |
atggaacctcaaaaaggtggaaaaagttcaaaagactaaggaggaggaagagaatgaagtgttatgggatgaattggaaacaaccctt |
388 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16967493 |
atggagcctcaaaaaggtggaaaaagttcagaagactaaggaggaggaagagaatgaagtgttatgggatgaattggaaacgaccctt |
16967406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 16976586 - 16976212
Alignment:
| Q |
5 |
gataaagagaaaatgacggagaataaaggaagggattataaaggtgtagctaacatccctattgagaagaagatgaagaaggaatctattgataagagtt |
104 |
Q |
| |
|
|||||||||||||||| |||||| || | |||||| ||| ||||| ||||||| |||||||||||||||||| |||||||||||||| | |
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| T |
16976586 |
gataaagagaaaatgatggagaacaacgaaagggactatgaaggtatagctaatatccctattgagaagaag---------gaatctattgataaccatg |
16976496 |
T |
|
| Q |
105 |
gtttgaatcaaagcgtcaaaagctcgcattttacgccaaaggagttgtgttcactcgaactccttgctcaatgctattgggaaagaaagaataccatgaa |
204 |
Q |
| |
|
||||||||||||||||||||| | | ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16976495 |
gtttgaatcaaagcgtcaaaaacccacattttatgccaaaggagttgcgttcactcgaactccttgctcaatgctattgggaaagaaagaataccatgaa |
16976396 |
T |
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| Q |
205 |
caaagattcaattgtgttgaaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctgtggacacgcctcatgaacggatatgg |
304 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16976395 |
caaagattcaattgtgatggaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctgtggacacacctcatgaacggatatgg |
16976296 |
T |
|
| Q |
305 |
aacctcaaaaaggtggaaaaagttcaaaagactaaggaggaggaagagaatgaagtgttatgggatgaattggaaacaaccctt |
388 |
Q |
| |
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| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
16976295 |
agcctcaaaaaggcggaaaaagttgaaaagactaaggaggaggaagagaatgaagtgatatgggatgaattggaaacagccctt |
16976212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 79 - 375
Target Start/End: Complemental strand, 16991856 - 16991560
Alignment:
| Q |
79 |
gaagaaggaatctattgataagagttgtttgaatcaaagcgtcaaaagctcgcattttacgccaaaggagttgtgttcactcgaactccttgctcaatgc |
178 |
Q |
| |
|
|||||||||||| | |||||| | | | ||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||| | ||||| |
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| T |
16991856 |
gaagaaggaatcaactgataacaatggattgaatcaaagcgtcaaaagcacacattttacgcgcaaggagttacgttcactcgaactccttgttaaatgc |
16991757 |
T |
|
| Q |
179 |
tattgggaaagaaagaataccatgaacaaagattcaattgtgttgaaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctg |
278 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||| ||||||| || ||| | ||||||| ||| |||||| |||||||||||| |||| |
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| T |
16991756 |
tattgggaaagaaagaatttcatgaacaatgattcaattgtgttagaggtcaacgacgatggtgttgatcagcatcatacacggccaccaccagtctctg |
16991657 |
T |
|
| Q |
279 |
tggacacgcctcatgaacggatatggaacctcaaaaaggtggaaaaagttcaaaagactaaggaggaggaagagaatgaagtgttatgggatgaatt |
375 |
Q |
| |
|
|||| || |||| |||||||||||||| ||| ||||||||||| | || |||||||| |||||||| || ||| | ||| |||||||||||||||| |
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|
| T |
16991656 |
tggagacacctcgtgaacggatatggagccttaaaaaggtggacatcgtgcaaaagaccaaggaggaagaggaggaggaactgttatgggatgaatt |
16991560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 17007436 - 17007056
Alignment:
| Q |
5 |
gataaagagaaaatgacggagaataaaggaagggattataaaggtgtagctaacatccctattgagaagaagatgaagaaggaatctattgataagagtt |
104 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| | | |
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|
| T |
17007436 |
gataaagagaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaa---gaagaaggaatctattgataacaatg |
17007340 |
T |
|
| Q |
105 |
gtttgaatcaaagcgtcaaaagctcgcattttacgccaaaggagttgtgttcactcgaactccttgctcaatgctattgggaaagaaagaataccatgaa |
204 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||| ||||||||| ||| ||| ||||| |||| | ||||| ||||| |||||||| | || |
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|
| T |
17007339 |
gtttgaatcaaagcttcaaaagctcactttttatgccgaaggagttgggtttacttgaactgcttggtaaatgcctctgggacgacaagaatactgttaa |
17007240 |
T |
|
| Q |
205 |
caaagattcaattgtgttgaaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctgtggacacgcctcatgaacggatatgg |
304 |
Q |
| |
|
| ||||||||||||||| || | || || | ||||||||| |||||||| ||| |||||| || ||| | || |||||||||||||||||| |
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| T |
17007239 |
ggatgattcaattgtgttggagatgaaggatattggcgttgatctgcaagatatgcagaaaccaccgacttgtgttaagacacctcatgaacggatatgg |
17007140 |
T |
|
| Q |
305 |
aacctcaaaaaggtggaaaaagttcaaaagactaaggaggaggaagagaatgaagtgttatgggatgaattggaaacaaccctt |
388 |
Q |
| |
|
| ||| |||||||||||||| || | ||| || |||||| |||||||| | ||| |||||||||||||||||| ||| ||||| |
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|
| T |
17007139 |
agccttaaaaaggtggaaaaggtgctaaaaacgaaggagcaggaagagcaggaaccgttatgggatgaattggatacatccctt |
17007056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 10602281 - 10602628
Alignment:
| Q |
7 |
taaagagaaaatgacggagaataaaggaagggattataaaggtgtagctaacatccctattgagaagaagatgaagaaggaatctattgataagagttgt |
106 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||| | |||||||||||||| | | || |
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|
| T |
10602281 |
taaacagaaaatggtggagaacaaaggaagggattataaaggtatagctaacatccatatcgagaagaaga------atgaatctattgataataatggt |
10602374 |
T |
|
| Q |
107 |
ttgaatcaaagcgtcaaaagctcgcattttacgccaaaggagttgtgttcactcgaactccttgctcaatgctattgggaaagaaagaataccatgaaca |
206 |
Q |
| |
|
|||| ||||||||||||||| | ||||||| | || |||||| ||||||||| ||||||||||||| || | |||||||||||| | |
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|
| T |
10602375 |
ttgatacaaagcgtcaaaagcacacattttatgtggaatgagttg------------ctccttgctaaatgctattgggacagtatgaataccatgaaga |
10602462 |
T |
|
| Q |
207 |
aagattcaattgtgttgaaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctgtggacacgcctcatgaacggatatggaa |
306 |
Q |
| |
|
| ||||||| | |||| || | | || ||| |||||||||| |||||||||||||||| ||| ||||||||||| || || | | |||||||| |
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|
| T |
10602463 |
atgattcaactttgttcgagtttgaggaggatggcgttgatcgacaagatacacagccacaaccggtttctgtggagacaccccc---atcgatatggag |
10602559 |
T |
|
| Q |
307 |
cctcaaaaaggtggaaaaagttcaaaagactaaggaggaggaagagaatgaagtgttatgggatgaatt |
375 |
Q |
| |
|
||| || |||||||||||||| |||||||| | ||||||||| ||||| |||||||||||||||||||| |
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|
| T |
10602560 |
ccttaagaaggtggaaaaagtgcaaaagaccatggaggaggaggagaacgaagtgttatgggatgaatt |
10602628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 16976668 - 16976594
Alignment:
| Q |
1 |
atcagataaagagaaaatgacggagaataaaggaagggattataaaggtgtagctaacatccctattgagaagaa |
75 |
Q |
| |
|
|||||| ||| ||||||| | |||||| ||||||||||| ||||||||| || |||||||||||||||||||||| |
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|
| T |
16976668 |
atcagagaaacagaaaataatggagaacaaaggaagggactataaaggtataactaacatccctattgagaagaa |
16976594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 385
Target Start/End: Complemental strand, 16968195 - 16968108
Alignment:
| Q |
298 |
gatatggaacctcaaaaaggtggaaaaagttcaaaagactaaggaggaggaagagaatgaagtgttatgggatgaattggaaacaacc |
385 |
Q |
| |
|
|||||||| | | |||||||||| |||||| |||||||| || ||||| ||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
16968195 |
gatatggagctttaaaaaggtgggaaaagtgcaaaagaccaacgaggatgaagagaatgatgtgttacaggatgaattggagacaacc |
16968108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 378
Target Start/End: Complemental strand, 16977111 - 16977031
Alignment:
| Q |
298 |
gatatggaacctcaaaaaggtggaaaaagttcaaaagactaaggaggaggaagagaatgaagtgttatgggatgaattgga |
378 |
Q |
| |
|
|||||||| | | |||||||||| |||||| | |||||| |||||||| || ||| | |||||||||||||||||| |||| |
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|
| T |
16977111 |
gatatggagctttaaaaaggtgggaaaagtgccaaagaccaaggaggatgaggaggaggaagtgttatgggatgaaatgga |
16977031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 17007792 - 17007751
Alignment:
| Q |
337 |
taaggaggaggaagagaatgaagtgttatgggatgaattgga |
378 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
17007792 |
taagcagggggaagagaatgaagtgctatgggatgaattgga |
17007751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 79 - 375
Target Start/End: Original strand, 35263522 - 35263818
Alignment:
| Q |
79 |
gaagaaggaatctattgataagagttgtttgaatcaaagcgtcaaaagctcgcattttacgccaaaggagttgtgttcactcgaactccttgctcaatgc |
178 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||| | ||||| |
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|
| T |
35263522 |
gaagaaggaatctattgataccaatggtttgaatcaaagcgtcaaaagcacacattttacgcggaaggagttgcgttcactcgaactccttgttaaatgc |
35263621 |
T |
|
| Q |
179 |
tattgggaaagaaagaataccatgaacaaagattcaattgtgttgaaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctg |
278 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| ||| || || ||| | |||| || |||||||||| |||||||||||| |||| |
|
|
| T |
35263622 |
tattgggaaagaaagaataccattaacaatgattcaattgtgttagaggataacgacgatggtgttggtcagcaagatacatggccaccaccagtctctg |
35263721 |
T |
|
| Q |
279 |
tggacacgcctcatgaacggatatggaacctcaaaaaggtggaaaaagttcaaaagactaaggaggaggaagagaatgaagtgttatgggatgaatt |
375 |
Q |
| |
|
|||| || |||| |||||||||||||| ||| ||||||||||||||||| ||||||| |||||||| || ||| | |||||||||||||||||||| |
|
|
| T |
35263722 |
tggagacacctcgtgaacggatatggagccttaaaaaggtggaaaaagtagaaaagaccaaggaggaagaggaggaggaagtgttatgggatgaatt |
35263818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35263450 - 35263510
Alignment:
| Q |
1 |
atcagataaagagaaaatgacggagaataaaggaagggattataaaggtgtagctaacatc |
61 |
Q |
| |
|
|||||||||| |||||| | |||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
35263450 |
atcagataaacagaaaacaatggagaacaaaagaagggattataaaggtagagctaacatc |
35263510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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