View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_high_9 (Length: 313)
Name: NF14868_high_9
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 87 - 311
Target Start/End: Complemental strand, 54267282 - 54267055
Alignment:
| Q |
87 |
actacgtaccaaggtagactgcaacaatcaattacaaagatcaccaccatatata--gaattgaaatgccacatgaaaataagttaaaacattag-ctaa |
183 |
Q |
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| T |
54267282 |
actacgtaccaaggtagactgcaacaatcaattacaaagatcaccaccatatatatagaattgaaatgccacatgaaaataagttaaaacattaggctaa |
54267183 |
T |
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| Q |
184 |
ctccatatattgatcaattaatgttggaagaagaaaactaatgaaaaagagtatgaaattaccttgtctccctttcttgttctgagactcattccaacaa |
283 |
Q |
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| T |
54267182 |
ctccatatattgatcaattaatgttggaagaagaaaactaatgaaaaagagtatgaaattaccttgtctccctttcttgttctgagactcattccaacaa |
54267083 |
T |
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| Q |
284 |
ttcttgtcccacaaatgagcttcatatc |
311 |
Q |
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| T |
54267082 |
ttcttgtcccacaaatgagcttcatatc |
54267055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 1229073 - 1229001
Alignment:
| Q |
239 |
aaattaccttgtctccctttcttgttctgagactcattccaacaattcttgtcccacaaatgagcttcatatc |
311 |
Q |
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| T |
1229073 |
aaatcaccttgtcttcctttcttgctttgtgattcattccagcaattcttatcccacaaatgagcttcatatc |
1229001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 54267352 - 54267311
Alignment:
| Q |
17 |
aatactaagtaattaaatgattcttttggtttcatttcattg |
58 |
Q |
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| T |
54267352 |
aatactaagtacttaaatgattcttttggtttcatttcattg |
54267311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 25049855 - 25049790
Alignment:
| Q |
244 |
accttgtctccctttcttgttctgagactcattccaacaattcttgtcccacaaatgagcttcata |
309 |
Q |
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| T |
25049855 |
accttgtcgtccttttttgttttgcgattcattccaacaattcttgtcccacaaatgagcttcata |
25049790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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