View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_low_1 (Length: 774)
Name: NF14868_low_1
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 458
Target Start/End: Original strand, 10596792 - 10597235
Alignment:
| Q |
15 |
caaaggctagtaaagagttaacaccagaggtgaaaactattcaagtgtgccaaaataagacaaatgataagaataaagagaaaggcacggaaaataagac |
114 |
Q |
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| T |
10596792 |
caaaggctagtgaggaggttgcaccagagatgaaaactactcaagcgtgccaaaacaagacaaatgataagaaggaagagaaaggggcggaaaatattac |
10596891 |
T |
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| Q |
115 |
gcgagactcttcagagcattctgtaaaggatagaaatacaacaaccaatgaagctggtaaaagtggaagacgagttctgtcggatgcagatgctgctgtt |
214 |
Q |
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| T |
10596892 |
aggggagtcttcagaacactctacagaagatagaaacacaacaactaatgaaggtggtaaaagtggaagacgagttctgtcggatgcagatgctgctgtt |
10596991 |
T |
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| Q |
215 |
ttgatacaagctgtttatcgcggttatctagtaagaaaatgggagcctttgaagaaattaaggcagataggtgaagtcagtaaggaggtgaccgatgtta |
314 |
Q |
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| T |
10596992 |
ttgatacaagctgtttatcgcggttatctagtaagaaaatgggagcctttaaagaaattgaggcagataggtgaagtcagtaaggaggtgaccgatgtta |
10597091 |
T |
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| Q |
315 |
gggaacgtgttcaagcttttgaaggtcattctgattttcaaaatgataacaagcaaaaaattgctattggagaaactataatgagactgttgctgaagtt |
414 |
Q |
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| T |
10597092 |
gggcacatgttcaagcttttgaaggtcattctgattttcaaaatgataacaagcaaaaaattgcaattggtgaaactataatgagactgttgctgaagtt |
10597191 |
T |
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| Q |
415 |
agatactttacaggtatgtgttagctaacaaattttactccaga |
458 |
Q |
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| T |
10597192 |
agatactatacaggtatgtgggagcgaacaagctttactccaga |
10597235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 532 - 758
Target Start/End: Original strand, 10597308 - 10597534
Alignment:
| Q |
532 |
ttatactaaatgctactgaacatgtattttcagggtttgcatccaagtttgagggaaatcagaaagtccctggcaagagagcttgtgactttacaggaaa |
631 |
Q |
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| T |
10597308 |
ttatactaaatgctactcgacatgtattttcagggtttgcatccaagtttgagggaaatcagaaagtccctggcaagagagcttgtgactttgcaggaaa |
10597407 |
T |
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| Q |
632 |
agcttgactctatatcggttaagattcctcagcagcagccccatgaagatgctaaagaacctgttgaagtctctccattgaatgttcataatggagaaca |
731 |
Q |
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| T |
10597408 |
agcttgattctataacggttaagaatccttgccagcagccccatgaagatgctaaagatcctgttgaagtcacttcattgaatgttcagaatgaaaaact |
10597507 |
T |
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| Q |
732 |
taatcaagagcagcaagaagagaaagt |
758 |
Q |
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| T |
10597508 |
taatcaagagcaacaagaagagaaagt |
10597534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 560 - 645
Target Start/End: Original strand, 53388104 - 53388189
Alignment:
| Q |
560 |
ttcagggtttgcatccaagtttgagggaaatcagaaagtccctggcaagagagcttgtgactttacaggaaaagcttgactctata |
645 |
Q |
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| T |
53388104 |
ttcagggtttgcatccaagtttgagggaaatcagaaagtccctggcaagagagcttgtgactttgcaggaaaagcttgactctata |
53388189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 711 - 758
Target Start/End: Original strand, 53388198 - 53388245
Alignment:
| Q |
711 |
gaatgttcataatggagaacataatcaagagcagcaagaagagaaagt |
758 |
Q |
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| T |
53388198 |
gaatgttcagaatggagaacaaaatcaagagcaacaagaagagaaagt |
53388245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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