View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14868_low_13 (Length: 300)

Name: NF14868_low_13
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14868_low_13
NF14868_low_13
[»] chr4 (31 HSPs)
chr4 (1-243)||(6207436-6207677)
chr4 (188-242)||(25909486-25909540)
chr4 (181-238)||(11824180-11824237)
chr4 (179-243)||(19909163-19909227)
chr4 (183-242)||(12719707-12719766)
chr4 (188-238)||(2654233-2654283)
chr4 (191-237)||(3657950-3657996)
chr4 (190-240)||(21957730-21957780)
chr4 (188-242)||(35383764-35383818)
chr4 (189-243)||(43074826-43074880)
chr4 (186-240)||(44356660-44356713)
chr4 (191-240)||(1420537-1420586)
chr4 (188-241)||(2016790-2016843)
chr4 (187-240)||(2017051-2017104)
chr4 (191-240)||(14016722-14016771)
chr4 (189-242)||(20112410-20112463)
chr4 (190-242)||(35615315-35615367)
chr4 (187-238)||(1420809-1420860)
chr4 (187-242)||(53312284-53312339)
chr4 (187-241)||(4796034-4796088)
chr4 (188-278)||(23759560-23759650)
chr4 (192-242)||(27978695-27978745)
chr4 (192-242)||(50769366-50769416)
chr4 (187-237)||(51362806-51362856)
chr4 (188-237)||(37832963-37833012)
chr4 (182-243)||(41465404-41465465)
chr4 (177-242)||(43074604-43074669)
chr4 (189-242)||(49185571-49185623)
chr4 (185-237)||(13209724-13209776)
chr4 (188-236)||(21451458-21451506)
chr4 (192-240)||(29697527-29697575)
[»] chr1 (16 HSPs)
chr1 (189-278)||(3377736-3377825)
chr1 (188-242)||(3377500-3377554)
chr1 (189-238)||(14978797-14978846)
chr1 (186-238)||(15659259-15659311)
chr1 (195-243)||(25085650-25085698)
chr1 (193-237)||(25486217-25486261)
chr1 (193-244)||(6320562-6320613)
chr1 (183-242)||(51250479-51250538)
chr1 (186-240)||(12960843-12960897)
chr1 (188-242)||(17760681-17760735)
chr1 (188-238)||(46573092-46573142)
chr1 (185-242)||(17692723-17692780)
chr1 (188-241)||(39642199-39642252)
chr1 (190-242)||(5287835-5287887)
chr1 (187-243)||(25085397-25085453)
chr1 (190-242)||(42924329-42924381)
[»] chr2 (22 HSPs)
chr2 (188-244)||(14489213-14489269)
chr2 (188-242)||(21358366-21358420)
chr2 (186-242)||(5470596-5470652)
chr2 (186-242)||(6592721-6592777)
chr2 (188-244)||(19399434-19399490)
chr2 (188-240)||(34679096-34679148)
chr2 (189-244)||(4576800-4576854)
chr2 (183-238)||(14943808-14943863)
chr2 (189-239)||(15022838-15022888)
chr2 (188-242)||(43028793-43028847)
chr2 (189-242)||(34679351-34679404)
chr2 (189-242)||(39918434-39918487)
chr2 (187-243)||(14489470-14489526)
chr2 (187-243)||(24472704-24472760)
chr2 (183-242)||(5362169-5362228)
chr2 (183-242)||(19206136-19206195)
chr2 (187-242)||(31827523-31827578)
chr2 (189-236)||(37803118-37803165)
chr2 (188-242)||(25379-25433)
chr2 (191-237)||(5362445-5362491)
chr2 (189-242)||(36176981-36177034)
chr2 (188-244)||(44617996-44618052)
[»] scaffold0515 (1 HSPs)
scaffold0515 (183-242)||(3633-3692)
[»] scaffold0306 (1 HSPs)
scaffold0306 (183-242)||(3633-3692)
[»] scaffold1458 (1 HSPs)
scaffold1458 (183-242)||(1465-1524)
[»] chr5 (21 HSPs)
chr5 (187-242)||(12406039-12406094)
chr5 (187-238)||(26562988-26563039)
chr5 (187-242)||(27904744-27904799)
chr5 (189-237)||(40132904-40132952)
chr5 (192-243)||(40133139-40133190)
chr5 (192-242)||(19131759-19131809)
chr5 (191-244)||(20630003-20630057)
chr5 (188-238)||(36798441-36798491)
chr5 (189-242)||(3333962-3334015)
chr5 (185-237)||(24405486-24405538)
chr5 (184-244)||(32391714-32391774)
chr5 (187-242)||(2974895-2974950)
chr5 (188-243)||(12406300-12406355)
chr5 (188-239)||(22300600-22300651)
chr5 (191-242)||(37897978-37898029)
chr5 (184-239)||(39574234-39574289)
chr5 (189-243)||(6131795-6131849)
chr5 (188-242)||(36798169-36798223)
chr5 (192-237)||(31080480-31080525)
chr5 (188-236)||(40276297-40276345)
chr5 (190-242)||(43098285-43098337)
[»] chr3 (17 HSPs)
chr3 (187-242)||(51315745-51315800)
chr3 (192-242)||(44586047-44586097)
chr3 (184-237)||(25154447-25154500)
chr3 (183-241)||(44127609-44127667)
chr3 (184-240)||(44433329-44433385)
chr3 (186-237)||(25902399-25902450)
chr3 (178-237)||(54718983-54719042)
chr3 (185-243)||(578671-578729)
chr3 (187-229)||(49787248-49787290)
chr3 (181-242)||(50802651-50802712)
chr3 (181-242)||(50873165-50873226)
chr3 (187-240)||(14992882-14992935)
chr3 (192-237)||(27178413-27178458)
chr3 (187-240)||(28944228-28944281)
chr3 (189-242)||(38177178-38177231)
chr3 (186-242)||(86825-86881)
chr3 (187-243)||(35359244-35359300)
[»] chr7 (22 HSPs)
chr7 (179-244)||(23826281-23826346)
chr7 (187-244)||(35250117-35250174)
chr7 (182-242)||(41243637-41243697)
chr7 (181-240)||(5172503-5172562)
chr7 (191-242)||(47909696-47909747)
chr7 (183-241)||(17931988-17932046)
chr7 (187-241)||(28786019-28786073)
chr7 (193-242)||(21505878-21505927)
chr7 (189-278)||(36580274-36580363)
chr7 (185-242)||(45697483-45697540)
chr7 (183-242)||(3247432-3247491)
chr7 (187-238)||(6792061-6792112)
chr7 (187-238)||(15106990-15107041)
chr7 (188-243)||(15347953-15348008)
chr7 (187-242)||(20505096-20505151)
chr7 (188-242)||(4049982-4050036)
chr7 (188-242)||(28350115-28350169)
chr7 (187-244)||(4049704-4049761)
chr7 (187-244)||(14247560-14247616)
chr7 (188-240)||(14247293-14247345)
chr7 (190-242)||(28472391-28472442)
chr7 (173-241)||(36903529-36903596)
[»] chr6 (14 HSPs)
chr6 (188-237)||(30349348-30349397)
chr6 (187-242)||(10727455-10727510)
chr6 (184-242)||(30349617-30349675)
chr6 (185-241)||(33399782-33399837)
chr6 (187-237)||(3812738-3812788)
chr6 (187-240)||(2203185-2203238)
chr6 (187-242)||(3579593-3579648)
chr6 (189-243)||(266122-266176)
chr6 (209-243)||(1614171-1614205)
chr6 (170-243)||(1377466-1377539)
chr6 (170-243)||(1385214-1385287)
chr6 (189-242)||(4037465-4037518)
chr6 (187-243)||(2164418-2164474)
chr6 (187-243)||(2176051-2176107)
[»] chr8 (13 HSPs)
chr8 (186-242)||(28349568-28349624)
chr8 (187-278)||(30539215-30539306)
chr8 (188-242)||(23702395-23702449)
chr8 (187-241)||(41487471-41487525)
chr8 (189-229)||(6807440-6807480)
chr8 (187-235)||(27545342-27545390)
chr8 (192-242)||(25896993-25897043)
chr8 (190-243)||(3676389-3676442)
chr8 (191-244)||(26823828-26823881)
chr8 (189-242)||(36688258-36688311)
chr8 (178-242)||(17070896-17070960)
chr8 (178-242)||(17577312-17577376)
chr8 (187-243)||(32071272-32071327)
[»] scaffold0328 (1 HSPs)
scaffold0328 (192-284)||(9415-9507)
[»] scaffold0194 (1 HSPs)
scaffold0194 (179-242)||(25155-25218)
[»] scaffold0809 (1 HSPs)
scaffold0809 (183-237)||(3023-3077)
[»] scaffold0025 (1 HSPs)
scaffold0025 (192-242)||(19602-19652)
[»] scaffold0150 (1 HSPs)
scaffold0150 (192-242)||(9558-9608)
[»] scaffold0137 (1 HSPs)
scaffold0137 (177-243)||(19902-19968)
[»] scaffold0250 (1 HSPs)
scaffold0250 (183-240)||(3566-3623)
[»] scaffold0735 (1 HSPs)
scaffold0735 (190-242)||(6061-6113)
[»] scaffold0372 (1 HSPs)
scaffold0372 (188-236)||(123-171)
[»] scaffold0286 (1 HSPs)
scaffold0286 (187-243)||(17935-17991)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6207677 - 6207436
Alignment:
Q  1 taagttcctcaactcatgcttgtgatcaatttacttgaaatttttcgttttgttgtgaaataaagtataggaaaattgtgttaatgtgaacgtcatcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  6207677 taagttcctcaactcatgcttgtgatcaatttacttgaaatttttcgttttgttgtgaaataaagtataggaaaag-gtgttaatgtgaacgtcatcatt 6207579  T
Q  101 ttctttattttacttcttggacaaaatttatgtataatttcatagacaccgttattacaaacttacagttctctactaaaataaaataggcttaatagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6207578 ttctttattttacttcttggacaaaatttatgtataatttcatagacaccgttattacaaacttacagttctctactaaaataaaataggcttaatagca 6207479  T
Q  201 gttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||||| || |||| ||||| |||||||||||||||||||||    
T  6207478 gttttagccccctaattttcctaaagttgtgattttggcccct 6207436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 25909486 - 25909540
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||  || |||||||| ||||||||||||||||||||||    
T  25909486 aggcttaatagcagttttaaccccctaacttttccaaagttgtgattttggcccc 25909540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 11824180 - 11824237
Alignment:
Q  181 ataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    |||| |||||||||||||||||||||  || |||||||||| ||||||||||||||||    
T  11824180 ataatataggcttaatagcagttttaaccccctaactttcctaaagttgtgattttgg 11824237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 19909163 - 19909227
Alignment:
Q  179 aaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||| || |||||||||||||||||||  || ||||||||| |||||||| |||||||||||||    
T  19909163 aaatacaaaaggcttaatagcagttttaaccccctaactttctcaaagttgcgattttggcccct 19909227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 12719766 - 12719707
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||| |||||||||||||||||||  || ||||||||||||||||||  |||||||||||    
T  12719766 aaaaaaggcttaatagcagttttaaccccctaactttcccaaagttgatattttggcccc 12719707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 2654283 - 2654233
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    ||||||||||| |||||||| || ||||||||||||||||||| |||||||    
T  2654283 aggcttaatagtagttttaggcccctaactttcccaaagttgttattttgg 2654233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 3657950 - 3657996
Alignment:
Q  191 cttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    ||||||||||||||||  | |||||||||||||||||||||||||||    
T  3657950 cttaatagcagttttaaccttctaactttcccaaagttgtgattttg 3657996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 21957780 - 21957730
Alignment:
Q  190 gcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||||||||||||||||| || |||||||| ||||||||| ||||||||||    
T  21957780 gcttaatagcagttttagccccctaacttttccaaagttgcgattttggcc 21957730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 35383764 - 35383818
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||| | || ||||||||| | |||||||||||||||||||    
T  35383764 aggcttaatagcagttttcgccccctaactttcacgaagttgtgattttggcccc 35383818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 43074880 - 43074826
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||| |||||| || |||||||||||||||||| ||||||| |||||    
T  43074880 ggcttaatagcaattttagccccctaactttcccaaagttgcgattttgacccct 43074826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 44356713 - 44356660
Alignment:
Q  186 ataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||||||||||||||||||||| || ||||||||| |||||||| ||||||||||    
T  44356713 ataggcttaatagcagttttag-cccctaactttctcaaagttgcgattttggcc 44356660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 1420537 - 1420586
Alignment:
Q  191 cttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    ||||||||||||||||| || |||||||| ||||||||| ||||||||||    
T  1420537 cttaatagcagttttagccccctaacttttccaaagttgcgattttggcc 1420586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 2016790 - 2016843
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    |||||| ||||||||||||| || |||||||| ||||||||| |||||||||||    
T  2016790 aggcttgatagcagttttagccccctaacttttccaaagttgcgattttggccc 2016843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 2017104 - 2017051
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    ||||||||||||||||||||| ||  ||||||||| ||||||| ||||||||||    
T  2017104 taggcttaatagcagttttagccccataactttcctaaagttgcgattttggcc 2017051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 14016722 - 14016771
Alignment:
Q  191 cttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    ||||||||| ||||||| || |||||||||||||||||| ||||||||||    
T  14016722 cttaatagcggttttagccccctaactttcccaaagttgcgattttggcc 14016771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 20112463 - 20112410
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||| ||||||||| | ||||||||| ||||||||| ||||||||||||    
T  20112463 ggcttaataacagttttagccttctaacttttccaaagttgcgattttggcccc 20112410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 35615315 - 35615367
Alignment:
Q  190 gcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||| || |||||||| | ||||||| ||||||||||||    
T  35615315 gcttaatagcagttttagccccctaacttttctaaagttgcgattttggcccc 35615367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 1420860 - 1420809
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    ||||||||||||||||||||| ||  ||||||||||||||||  ||||||||    
T  1420860 taggcttaatagcagttttagccccttaactttcccaaagttacgattttgg 1420809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 53312284 - 53312339
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||| |||||| || ||||||||  |||||||| ||||||||||||    
T  53312284 taggcttaatagcatttttagccccctaactttttcaaagttgcgattttggcccc 53312339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 4796034 - 4796088
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    |||||||||||||| ||||||||| ||||||||  |||| ||| |||||||||||    
T  4796034 taggcttaatagcatttttagtcccctaactttttcaaaattgcgattttggccc 4796088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 23759560 - 23759650
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccccttnnnnnnnncactacaaaaccgtcccctaagtttt 278  Q
    ||||||||||| |||||| | || |||||||||  ||||||| ||||||||||||||         |||||||||||||||||||| ||||    
T  23759560 aggcttaatagtagttttcgccccctaactttcataaagttgcgattttggccccttaagaaaaaaactacaaaaccgtcccctaaatttt 23759650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 27978695 - 27978745
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||| || |||||||||||| |||||||| ||||||| ||||    
T  27978695 ttaatagcagtttaagccctctaactttctcaaagttgcgattttgacccc 27978745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 50769366 - 50769416
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||  || |||||||||||||||||| ||||||| ||||    
T  50769366 ttaatagcagttttatccccctaactttcccaaagttgcgattttgccccc 50769416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 51362856 - 51362806
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||| |||||||||||||| |||| ||||||||  ||||||||||||||||    
T  51362856 taggtttaatagcagttttcgtcccctaacttttacaaagttgtgattttg 51362806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 37833012 - 37832963
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||||||||||||||||| |  |||||||||| ||||||| |||||||    
T  37833012 aggcttaatagcagttttagcctcctaactttcctaaagttgcgattttg 37832963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 41465404 - 41465465
Alignment:
Q  182 taaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||||||  || |||| |||  |||| ||| |||||||||||||||||||||||    
T  41465404 taaaataggcttaattacacttttggtctcctaagttttccaaagttgtgattttggcccct 41465465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 43074604 - 43074669
Alignment:
Q  177 taaaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||| || ||||||||||||| |||| | || ||||||||| | |||||| ||||||||||||    
T  43074604 taaaatataaaaggcttaatagcaattttcgccccctaactttcacgaagttgcgattttggcccc 43074669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 49185571 - 49185623
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  49185571 ggcttaatagcagttttaaccccctaactttccc-aagttgcgattttggcccc 49185623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 13209776 - 13209724
Alignment:
Q  185 aataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||||||||| ||| |||| | ||||||||||||| ||||||| |||||||    
T  13209776 aataggcttaattgcacttttggccctctaactttccaaaagttgcgattttg 13209724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 21451458 - 21451506
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgatttt 236  Q
    |||||||||||||||||||| |  ||||||||| |||||||| ||||||    
T  21451458 aggcttaatagcagttttagcctcctaactttctcaaagttgcgatttt 21451506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 29697527 - 29697575
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    ||||||||||||||||||||||||  ||  |||||||| ||||||||||    
T  29697527 ttaatagcagttttagtcctctaaaattatcaaagttgcgattttggcc 29697575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 3377825 - 3377736
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccccttnnnnnnnncactacaaaaccgtcccctaagtttt 278  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||    
T  3377825 ggcttaatagcagttttagccccctaactttcccaaagttgtgattttggccccctaggaaaaaaactacaaaaccgtcccctaagtttt 3377736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 3377500 - 3377554
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||| || |||||||| ||||||||| ||||||||||||    
T  3377500 aggcttaatagcagttttagccccctaacttttccaaagttgcgattttggcccc 3377554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 14978797 - 14978846
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    ||||||||||||||||||| || |||||||| ||||||||| ||||||||    
T  14978797 ggcttaatagcagttttagccccctaacttttccaaagttgcgattttgg 14978846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 15659311 - 15659259
Alignment:
Q  186 ataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    ||||| |||||||||||||||  || |||||||| ||||||||||||||||||    
T  15659311 ataggtttaatagcagttttaagcccctaacttttccaaagttgtgattttgg 15659259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 25085698 - 25085650
Alignment:
Q  195 atagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||| |||||| || |||||||| |||||||||||||||||||||||    
T  25085698 atagcaattttagccccctaacttttccaaagttgtgattttggcccct 25085650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 25486217 - 25486261
Alignment:
Q  193 taatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||    
T  25486217 taatagcagttttagtcccttaactttctcaaagttgtgattttg 25486261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 6320562 - 6320613
Alignment:
Q  193 taatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    |||| |||||||||| ||||||||||| | ||||||| ||||||||||||||    
T  6320562 taattgcagttttagccctctaacttttctaaagttgcgattttggcccctt 6320613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 51250479 - 51250538
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||| |||||||||| ||||||||| || ||||||||  |||||||| ||||||||||||    
T  51250479 aaaaaaggcttaataacagttttagccccctaactttttcaaagttgcgattttggcccc 51250538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 12960843 - 12960897
Alignment:
Q  186 ataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||||||||||| ||||||||| || ||||||||  |||||||| ||||||||||    
T  12960843 ataggcttaataacagttttagcccgctaactttttcaaagttgcgattttggcc 12960897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 17760681 - 17760735
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||| ||||| || ||||||| | |||||||| ||||||||||||    
T  17760681 aggcttaatagcagctttagccccctaacttcctcaaagttgcgattttggcccc 17760735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 46573142 - 46573092
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    |||||||||||||||||| |||||||||||||  | |||||| ||||||||    
T  46573142 aggcttaatagcagtttttgtcctctaacttttacgaagttgcgattttgg 46573092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 17692723 - 17692780
Alignment:
Q  185 aataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||| ||||||||| |||||  || ||||||||| ||||||||||||||| |||||    
T  17692723 aataggtttaatagcaattttaaccccctaactttctcaaagttgtgattttagcccc 17692780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 39642199 - 39642252
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    |||||||||||||||||| | || ||||||||| | |||||| |||||||||||    
T  39642199 aggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggccc 39642252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 5287887 - 5287835
Alignment:
Q  190 gcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||  ||  |||||||| |||||||| ||||||||||||    
T  5287887 gcttaatagcagttttaaccccttaactttctcaaagttgcgattttggcccc 5287835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 25085397 - 25085453
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||||||||||||||||| | || |||||||||  ||||||| ||||||| |||||    
T  25085397 taggcttaatagcagttttcgccccctaactttcataaagttgcgattttgacccct 25085453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 42924329 - 42924381
Alignment:
Q  190 gcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||| |||||| | |||||||||||| | |||||||||||||| ||||    
T  42924329 gcttaatagtagtttttgccctctaactttcacgaagttgtgattttgacccc 42924381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 14489213 - 14489269
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  14489213 aggcttaatagcagttttagccctctaactttccaaaagttgtgattttggcccctt 14489269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 21358420 - 21358366
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||| | || ||||||||| |||||||||||||||||||||    
T  21358420 aggcttaatagcagtttttgccccctaactttctcaaagttgtgattttggcccc 21358366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 5470652 - 5470596
Alignment:
Q  186 ataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||| ||||||||||||| || |||||||||| ||||||| ||||||||||||    
T  5470652 ataggctttatagcagttttagccccctaactttcctaaagttgcgattttggcccc 5470596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 6592721 - 6592777
Alignment:
Q  186 ataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||||| || |||||||| ||||||||| ||||||| ||||    
T  6592721 ataggcttaatagcagttttagccccctaacttttccaaagttgcgattttgacccc 6592777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 19399490 - 19399434
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    |||||||||||||||||||| || ||||||||  ||||||||||||||||| |||||    
T  19399490 aggcttaatagcagttttagccccctaactttttcaaagttgtgattttggtccctt 19399434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 34679096 - 34679148
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||||||||||||||||||| || |||||||| ||||||||| ||||||||||    
T  34679096 aggcttaatagcagttttagccccctaacttttccaaagttgcgattttggcc 34679148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 4576854 - 4576800
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    ||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||    
T  4576854 ggcttaatagcagttttagacccctaacttt-ccaaagttgcgattttggcccctt 4576800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 14943863 - 14943808
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    |||| |||||||||||||||||||| ||  ||||||| ||||||||||||||||||    
T  14943863 aaaaaaggcttaatagcagttttagccccttaacttttccaaagttgtgattttgg 14943808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 15022838 - 15022888
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggc 239  Q
    ||||||||||||||||||| || |||||||| | |||||||||||||||||    
T  15022838 ggcttaatagcagttttagccccctaacttttcgaaagttgtgattttggc 15022888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 43028793 - 43028847
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||| || |||||||  ||||||||| ||||||||||||    
T  43028793 aggcttaatagcagttttagccccctaacttctccaaagttgcgattttggcccc 43028847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 34679404 - 34679351
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||| | || ||||||||| | |||||||||||||||||||    
T  34679404 ggcttaatagcagtttttgccccctaactttcacgaagttgtgattttggcccc 34679351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 39918434 - 39918487
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||| |||||||| || ||||||||| |||||||| ||||||||||||    
T  39918434 ggcttaatagtagttttagccccctaactttctcaaagttgcgattttggcccc 39918487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 14489526 - 14489470
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||||||||||||||||| | || ||||||||| | |||||| |||||||||||||    
T  14489526 taggcttaatagcagttttcgccccctaactttcacgaagttgcgattttggcccct 14489470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 24472760 - 24472704
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||||||||||||  | |||| ||| |||||||||||||||| ||||||    
T  24472760 taggcttaatagcagttttagaaccctaatttttccaaagttgtgattttagcccct 24472704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 5362169 - 5362228
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||| | |||| | || ||||||||| |||||||| ||||||||||||    
T  5362169 aaaataggcttaatagtaattttcgccccctaactttcacaaagttgcgattttggcccc 5362228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 19206136 - 19206195
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||| |||| | || |||| |||| |||||||| ||||||||||||    
T  19206136 aaaataggcttaatagcaattttcgccccctaattttcacaaagttgcgattttggcccc 19206195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 31827523 - 31827578
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||||   | |||||||| ||||||||||||||||| ||||    
T  31827523 taggcttaatagcagttttaactccctaacttttccaaagttgtgattttgccccc 31827578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 37803118 - 37803165
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgatttt 236  Q
    |||||||||||||||||||||  ||||||||| |||||||| ||||||    
T  37803118 ggcttaatagcagttttagtctcctaactttctcaaagttgcgatttt 37803165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 25379 - 25433
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||| ||||||| | || |||||||||||||||||  ||||||||||||    
T  25379 aggcttaataacagtttttgccccctaactttcccaaagttacgattttggcccc 25433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 5362491 - 5362445
Alignment:
Q  191 cttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||||||||||||| ||| |||||||| | |||||||||||||||    
T  5362491 cttaatagcagttttaatcccctaacttttctaaagttgtgattttg 5362445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 36176981 - 36177034
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||| ||||||| |||| | |||||| |||||| |||||    
T  36176981 ggcttaatagcagttttagccctctaagtttcacgaagttgcgattttagcccc 36177034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 44618052 - 44617996
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    |||||||||||||||||||  ||||||||||||   |||||| |||||||| |||||    
T  44618052 aggcttaatagcagttttaaccctctaactttcaagaagttgcgattttggtccctt 44617996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 3633 - 3692
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  3633 aaaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 3633 - 3692
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  3633 aaaataggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 1465 - 1524
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||    
T  1465 aaaataggcttaatagcagttttagccccctaactttcacaaagttgagattttggcccc 1524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 12406039 - 12406094
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  12406039 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 12406094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 26562988 - 26563039
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  26562988 taggcttaatagcagttttagtccgctaacttttccaaagttgtgattttgg 26563039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 27904799 - 27904744
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||    
T  27904799 taggcttaatagcagttttagccctctaactttttcaaagttgcgattttggcccc 27904744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 40132904 - 40132952
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||||||||||||||||||||||||||||  |||||||| |||||||    
T  40132904 ggcttaatagcagttttagtcctctaactttttcaaagttgcgattttg 40132952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 40133190 - 40133139
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||||||| |||||| || |||||||||||||||||| |||||||||||||    
T  40133190 ttaatagcaattttagccccctaactttcccaaagttgcgattttggcccct 40133139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 19131809 - 19131759
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||||||||||| | ||||||| |||||| |||||    
T  19131809 ttaatagcagttttagtcctctaacttttctaaagttgcgatttttgcccc 19131759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 20630057 - 20630003
Alignment:
Q  191 cttaatagcagttttagtc-ctctaactttcccaaagttgtgattttggcccctt 244  Q
    ||||||||||||||||| | | |||||||| ||||||||||||||||||||||||    
T  20630057 cttaatagcagttttagcctccctaacttttccaaagttgtgattttggcccctt 20630003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 36798491 - 36798441
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    |||||||||||||||||||| || ||||||||| |||||||| ||||||||    
T  36798491 aggcttaatagcagttttagccccctaactttctcaaagttgcgattttgg 36798441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 3334015 - 3333962
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||| |||||||| || |||||||| ||||||||| ||||||||||||    
T  3334015 ggcttaatagtagttttagccccctaacttttccaaagttgcgattttggcccc 3333962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 24405486 - 24405538
Alignment:
Q  185 aataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||| ||||||||||||||||||| ||||||||  |||||||| |||||||    
T  24405486 aataggtttaatagcagttttagtcccctaactttttcaaagttgcgattttg 24405538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 32391714 - 32391774
Alignment:
Q  184 aaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    ||||| |||||||||||||||| | ||  |||||||| | |||||||||||||||||||||    
T  32391714 aaataagcttaatagcagttttcgccccttaactttcacgaagttgtgattttggcccctt 32391774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 2974950 - 2974895
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||| | || ||||||||| | |||||| ||||||||||||    
T  2974950 taggcttaatagcagtttttgccccctaactttcacgaagttgcgattttggcccc 2974895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 12406355 - 12406300
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||||||||||| |||||| || ||||||||  |||||||| |||||||||||||    
T  12406355 aggcttaatagcaattttagccccctaactttttcaaagttgagattttggcccct 12406300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 22300600 - 22300651
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggc 239  Q
    ||||||||||| |||||||| ||||||||||| | ||||||| |||||||||    
T  22300600 aggcttaatagtagttttagccctctaacttttctaaagttgcgattttggc 22300651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 37898029 - 37897978
Alignment:
Q  191 cttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||| || ||||||||  |||||||| ||||||||||||    
T  37898029 cttaatagcagttttagccccctaactttttcaaagttgcgattttggcccc 37897978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 39574234 - 39574289
Alignment:
Q  184 aaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggc 239  Q
    ||||| |||||||||||||||| | |||||||||||| | |||||| |||||||||    
T  39574234 aaataagcttaatagcagttttcgccctctaactttcacgaagttgcgattttggc 39574289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 6131849 - 6131795
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||||||||||    |||||||||| ||||||| |||||||||||||    
T  6131849 ggcttaatagcagttttagctacctaactttcctaaagttgcgattttggcccct 6131795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 36798169 - 36798223
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||| ||  ||||||| |||||||||  |||||||||||    
T  36798169 aggcttaatagcagttttagacccttaacttttccaaagttgcaattttggcccc 36798223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 31080480 - 31080525
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||| ||||||||| ||||||||||| ||||||||| |||||||    
T  31080480 ttaatatcagttttagccctctaacttttccaaagttgcgattttg 31080525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 40276345 - 40276297
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgatttt 236  Q
    |||||||||||||||||||  || |||||||||||||| ||| ||||||    
T  40276345 aggcttaatagcagttttatccccctaactttcccaaatttgcgatttt 40276297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 43098337 - 43098285
Alignment:
Q  190 gcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||||| ||||||||  |||||||  |||||| |||||    
T  43098337 gcttaatagcagttttagtcccctaactttttcaaagttacgatttttgcccc 43098285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 51315800 - 51315745
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  51315800 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 51315745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 44586097 - 44586047
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  44586097 ttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 44586047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 25154500 - 25154447
Alignment:
Q  184 aaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||||||||||||||||||||  || |||||||| |||||||||||||||||    
T  25154500 aaataggcttaatagcagttttaaccccctaactttaccaaagttgtgattttg 25154447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 44127667 - 44127609
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    ||||||||||||||||||||||||   |||||| |||| |||||||| |||||||||||    
T  44127667 aaaataggcttaatagcagttttaactctctaattttctcaaagttgcgattttggccc 44127609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 44433385 - 44433329
Alignment:
Q  184 aaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||||||||||||||||||||||| || |||||||| ||| ||||| ||||| ||||    
T  44433385 aaataggcttaatagcagttttagccccctaacttttccacagttgcgatttcggcc 44433329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 25902399 - 25902450
Alignment:
Q  186 ataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    ||||||||||||  |||||||| ||||||||||| |||||||| ||||||||    
T  25902399 ataggcttaatactagttttagccctctaacttttccaaagttatgattttg 25902450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 54718983 - 54719042
Alignment:
Q  178 aaaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||| |||| |||||||||||||||||| |||| ||||||||| | |||||| |||||||    
T  54718983 aaaaaaaaaaaggcttaatagcagttttcgtccactaactttcacgaagttgcgattttg 54719042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 578729 - 578671
Alignment:
Q  185 aataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||| |||||| ||||||||| |  |||||||| ||||||||| |||||||||||||    
T  578729 aataggtttaatatcagttttagcctcctaacttttccaaagttgcgattttggcccct 578671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 49787248 - 49787290
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttg 229  Q
    |||||||||||||| |||||| ||||||||||| |||||||||    
T  49787248 taggcttaatagcaattttagccctctaacttttccaaagttg 49787290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 50802651 - 50802712
Alignment:
Q  181 ataaaataggcttaatagcagttttagtcctct-aactttcccaaagttgtgattttggcccc 242  Q
    |||| ||| |||||||||||||||||  ||||| |||||| ||||||||||||||||||||||    
T  50802651 ataatataagcttaatagcagttttaa-cctcttaacttttccaaagttgtgattttggcccc 50802712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 50873226 - 50873165
Alignment:
Q  181 ataaaataggcttaatagcagttttagtcctct-aactttcccaaagttgtgattttggcccc 242  Q
    |||| ||| |||||||||||||||||  ||||| |||||| ||||||||||||||||||||||    
T  50873226 ataatataagcttaatagcagttttaa-cctcttaacttttccaaagttgtgattttggcccc 50873165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 14992935 - 14992882
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||| |||||| ||||||||| |  |||||||||| ||||||||||||||||||    
T  14992935 taggtttaataacagttttagccgcctaactttcctaaagttgtgattttggcc 14992882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 27178458 - 27178413
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||||||||||||| |||| ||||||  ||||||||||||||||    
T  27178458 ttaatagcagttttagccctccaactttttcaaagttgtgattttg 27178413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 28944281 - 28944228
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    ||||||||||||||||||| |||| ||||||||  | |||||| ||||||||||    
T  28944281 taggcttaatagcagtttttgtcccctaacttttactaagttgcgattttggcc 28944228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 38177178 - 38177231
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||| ||| |||||| ||  ||||||||||||||||| ||||||||||||    
T  38177178 ggcttaatggcaattttagccccttaactttcccaaagttgcgattttggcccc 38177231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 86881 - 86825
Alignment:
Q  186 ataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||| |||||| |||| |||||||||   |||||| ||||||||||||    
T  86881 ataggcttaataggagttttcgtcccctaactttcatgaagttgcgattttggcccc 86825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 35359300 - 35359244
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||| ||||||   |||||||||||| | ||||||| ||||||||||||    
T  35359300 taggcttaatagtagttttcaccctctaactttcacgaagttgtaattttggcccct 35359244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 23826346 - 23826281
Alignment:
Q  179 aaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    ||||||| ||||||||||||||||||| |||| ||||||||| | |||||| ||||||||||||||    
T  23826346 aaataaattaggcttaatagcagtttttgtcccctaactttcacgaagttgcgattttggcccctt 23826281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 35250117 - 35250174
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    |||||||||||| |||||||| ||||||||||| ||||||||| |||||||| |||||    
T  35250117 taggcttaatagtagttttagccctctaacttttccaaagttgcgattttggtccctt 35250174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 41243637 - 41243697
Alignment:
Q  182 taaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||||||||| || |||||||| |||||||||  ||||| |||||    
T  41243637 taaaataggcttaatagcagttttagccccctaacttttccaaagttgcaattttagcccc 41243697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 5172503 - 5172562
Alignment:
Q  181 ataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    ||||| ||| ||||||| |||||||||||||||||||||   ||||||||||||||||||    
T  5172503 ataaattagacttaataacagttttagtcctctaacttttttaaagttgtgattttggcc 5172562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 47909696 - 47909747
Alignment:
Q  191 cttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||| || |||||||||||||||||| |||||| |||||    
T  47909696 cttaatagcagttttagccccctaactttcccaaagttgcgattttagcccc 47909747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 17932046 - 17931988
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    ||||||||||||||||||||||||| |  || ||||| ||||||||| |||||||||||    
T  17932046 aaaataggcttaatagcagttttagcctcctcacttttccaaagttgcgattttggccc 17931988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 28786073 - 28786019
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    ||||||||||||||||||||  ||  ||||||| |||||||||||||||||||||    
T  28786073 taggcttaatagcagttttaaccccataacttttccaaagttgtgattttggccc 28786019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 21505927 - 21505878
Alignment:
Q  193 taatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||| ||||||||  |||||||| ||||||||||||    
T  21505927 taatagcagttttagtcccctaactttttcaaagttgcgattttggcccc 21505878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 36580274 - 36580363
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccccttnnnnnnnncactacaaaaccgtcccctaagtttt 278  Q
    ||||||||||||||||| | || ||||||||| | ||||||||||||||| ||| |         |||||||||||||||||||||||||    
T  36580274 ggcttaatagcagttttcggcccctaactttcacgaagttgtgattttggtcccctaagaaaaaaactacaaaaccgtcccctaagtttt 36580363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 45697483 - 45697540
Alignment:
Q  185 aataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||| ||||||| |||| ||||||||| | |||||| ||||||||||||    
T  45697483 aataggcttaataacagttttcgtcccctaactttctcgaagttgcgattttggcccc 45697540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 3247491 - 3247432
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||| |||||||| || |||| |||| ||||||||| | |||||||||||||||||||    
T  3247491 aaaataagcttaataacaattttcgtcccctaactttcacgaagttgtgattttggcccc 3247432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 6792112 - 6792061
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    |||| |||||||||||||||| || |||||||| ||||||||| ||||||||    
T  6792112 taggtttaatagcagttttagccccctaacttttccaaagttgcgattttgg 6792061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 15106990 - 15107041
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg 238  Q
    |||| |||||||||||||||| ||||||||||  | ||||||||||||||||    
T  15106990 taggtttaatagcagttttagccctctaacttgtctaaagttgtgattttgg 15107041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 15347953 - 15348008
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||| ||||||| || |||||||||| ||||||| ||||||| |||||    
T  15347953 aggcttaatagccgttttagccccctaactttcctaaagttgcgattttgacccct 15348008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 20505096 - 20505151
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||| |||||||||||||||| || ||||||||| |||||||| || |||||||||    
T  20505096 taggtttaatagcagttttagccccctaactttctcaaagttgcgactttggcccc 20505151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 4050036 - 4049982
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||| | ||  |||||||| | |||||||||||||||||||    
T  4050036 aggcttaatagcagttttcgccccttaactttcacgaagttgtgattttggcccc 4049982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 28350115 - 28350169
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||| || ||||||||| | |||||  ||||||||||||    
T  28350115 aggcttaatagcagttttagccccctaactttcacgaagttacgattttggcccc 28350169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 4049704 - 4049761
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    |||| |||| ||||||||||| || |||||||| | ||||||| ||||||||||||||    
T  4049704 taggtttaacagcagttttagcccactaacttttctaaagttgcgattttggcccctt 4049761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 14247616 - 14247560
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    |||||||||||||||||||| ||| |||||||| ||||||||| ||||| | ||||||    
T  14247616 taggcttaatagcagtttta-tcccctaacttttccaaagttgcgatttcgacccctt 14247560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 14247293 - 14247345
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||||||||||||||||| | |  ||||||||| | |||||||||||||||||    
T  14247293 aggcttaatagcagttttcgccacctaactttcacgaagttgtgattttggcc 14247345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 28472391 - 28472442
Alignment:
Q  190 gcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||| || |||||||| ||||||||| ||||||| ||||    
T  28472391 gcttaatagcagttttag-cccctaacttttccaaagttgcgattttgacccc 28472442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 36903596 - 36903529
Alignment:
Q  173 ctactaaaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    ||||||||||||| | ||||||||||||||||||  || ||||||||  ||| |||| |||||||||||    
T  36903596 ctactaaaataaa-tcggcttaatagcagttttaaccccctaactttttcaatgttgcgattttggccc 36903529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 30349348 - 30349397
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  30349348 aggcttaatagcagttttagccctctaactttcccaaagttgcgattttg 30349397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 10727510 - 10727455
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||| ||||||||||||||| || |||||||| ||||||||||||||||||||||    
T  10727510 taggcataatagcagttttagccccctaacttttccaaagttgtgattttggcccc 10727455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 30349675 - 30349617
Alignment:
Q  184 aaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||||| |||| ||||||||  |||||||| ||||||||||||    
T  30349675 aaataggcttaatagcagtttttgtcccctaactttttcaaagttgcgattttggcccc 30349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 33399782 - 33399837
Alignment:
Q  185 aataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    ||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||    
T  33399782 aataggcttaatagcagttttag-cccctaacttttccaaagttgcgattttggccc 33399837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 3812738 - 3812788
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||||||    
T  3812738 taggcttaatagcagttttaactctctaactttcctaaagttgtgattttg 3812788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 2203185 - 2203238
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||||||||||||| ||||||  | |||||||||||||||||| ||||||||||    
T  2203185 taggcttaatagcaattttagctccctaactttcccaaagttgcgattttggcc 2203238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 3579593 - 3579648
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||| ||||  |||||||| | |||||| ||||||||||||    
T  3579593 taggcttaatagcagttttcgtcccttaactttcacgaagttgcgattttggcccc 3579648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 266122 - 266176
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||||||||||||||||| || | ||||||||||||| ||  ||||||||||||    
T  266122 ggcttaatagcagttttagcccccaaactttcccaaagctgcaattttggcccct 266176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 1614205 - 1614171
Alignment:
Q  209 cctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||||| |||||||||||||||||||||||||||    
T  1614205 cctctaagtttcccaaagttgtgattttggcccct 1614171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 1377539 - 1377466
Alignment:
Q  170 tctctactaaaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||| ||| | |||| ||| |||||| ||||||| |||| ||||||||| | |||||| |||||||||||||    
T  1377539 tctctattaataaaaaaaaggtttaatatcagttttcgtcccctaactttcacgaagttgcgattttggcccct 1377466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 1385287 - 1385214
Alignment:
Q  170 tctctactaaaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||| ||| | |||| ||| |||||| ||||||| |||| ||||||||| | |||||| |||||||||||||    
T  1385287 tctctattaataaaaaaaaggtttaatatcagttttcgtcccctaactttcacgaagttgcgattttggcccct 1385214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 4037518 - 4037465
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||| ||| |||| |||||||  |||||| ||||||||||||||||||||    
T  4037518 ggcttaattgcacttttggtcctctgtctttccaaaagttgtgattttggcccc 4037465  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 2164418 - 2164474
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||||||||||  |||||||| | ||  ||||||| |||||||||||||    
T  2164418 taggcttaatagcagttttgatcctctaagtatcataaagttgcgattttggcccct 2164474  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 2176051 - 2176107
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||||||||||  |||||||| | ||  ||||||| |||||||||||||    
T  2176051 taggcttaatagcagttttgatcctctaagtatcataaagttgcgattttggcccct 2176107  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 28349624 - 28349568
Alignment:
Q  186 ataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||| |||||||| || |||||||||||||||||| ||||||||||||    
T  28349624 ataggcttaatagtagttttagccccctaactttcccaaagttgcgattttggcccc 28349568  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 30539306 - 30539215
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttgg-ccccttnnnnnnnncactacaaaaccgtcccctaagtttt 278  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||          |||||||||||||||||||||||||    
T  30539306 taggcttaatagcagttttagccct-taactttcccaaagttgcgattttggtcccctaagaaaaaaaactacaaaaccgtcccctaagtttt 30539215  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 23702449 - 23702395
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||||||| || |||||||||| ||||||| |||||| |||||    
T  23702449 aggcttaatagcagttttagccccctaactttccaaaagttgcgattttagcccc 23702395  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 41487525 - 41487471
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggccc 241  Q
    |||| |||||||||||||||| ||||||||||| ||||||||| |||||| ||||    
T  41487525 taggtttaatagcagttttagccctctaacttttccaaagttgcgattttagccc 41487471  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 6807480 - 6807440
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttg 229  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  6807480 ggcttaatagcaattttagtcccctaactttcccaaagttg 6807440  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 27545342 - 27545390
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattt 235  Q
    ||||||||||||||||||||| | ||||||||| ||||||||| |||||    
T  27545342 taggcttaatagcagttttagccgtctaacttttccaaagttgcgattt 27545390  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 25896993 - 25897043
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||||||||||||||| || ||||||||  |||||||| ||||||||||||    
T  25896993 ttaatagcagttttagccccctaactttttcaaagttgcgattttggcccc 25897043  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 3676442 - 3676389
Alignment:
Q  190 gcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||||||||  ||||||| |||||||||||| | |||||| |||||    
T  3676442 gcttaatagcagttttaaccctctaattttcccaaagttataattttgacccct 3676389  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 26823828 - 26823881
Alignment:
Q  191 cttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccctt 244  Q
    ||||||||||||||||  |||||||||||| |||||||  ||||||| ||||||    
T  26823828 cttaatagcagttttaaccctctaactttctcaaagttacgattttgacccctt 26823881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 36688311 - 36688258
Alignment:
Q  189 ggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||  || ||||||||  |||||||||||||||| ||||    
T  36688311 ggcttaatagcagttttaaccccctaactttttcaaagttgtgattttgacccc 36688258  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 17070896 - 17070960
Alignment:
Q  178 aaaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||| |||| |||||||||||||||||| | ||  |||||||| | |||||| ||||||||||||    
T  17070896 aaaaaaaaaaaggcttaatagcagttttcgccccttaactttcacgaagttgcgattttggcccc 17070960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 17577376 - 17577312
Alignment:
Q  178 aaaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||| |||| |||||||||||||||||| | ||  |||||||| | |||||| ||||||||||||    
T  17577376 aaaaaaaaaaaggcttaatagcagttttcgccccttaactttcacgaagttgcgattttggcccc 17577312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 32071327 - 32071272
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    ||||||||||||||||||||| || |||||||| | ||||||| ||||||| |||||    
T  32071327 taggcttaatagcagttttag-cccctaacttttctaaagttgcgattttgacccct 32071272  T

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Target: scaffold0328 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 9415 - 9507
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggccccttnnnnnnnncactacaaaaccgtcccctaagttttacatat 284  Q
    |||||||||||||||| || |||| |||||||||||||||||||| ||||  |         ||||||||||||||||||||||||| |||||    
T  9415 ttaatagcagttttagccccctaattttcccaaagttgtgatttttgccctctaagaaaaaaactacaaaaccgtcccctaagttttgcatat 9507  T

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Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 25218 - 25155
Alignment:
Q  179 aaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    |||| |||||||| ||||||||||||||| | ||||||||| | |||||||||||||| |||||    
T  25218 aaatcaaataggcataatagcagttttagccttctaacttttctaaagttgtgattttagcccc 25155  T

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Target: scaffold0809 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 3077 - 3023
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttg 237  Q
    |||||||| ||||||||||||||||| | ||||||||| |||||||| |||||||    
T  3077 aaaataggattaatagcagttttagttccctaactttctcaaagttgcgattttg 3023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 19652 - 19602
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||||||||||    
T  19652 ttaatagcagttttagtcccctaactttttcaaagttgcgattttggcccc 19602  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 9558 - 9608
Alignment:
Q  192 ttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||| |||||||| ||  ||||||| ||||||||||||||||||||||    
T  9558 ttaatagtagttttagccccttaacttttccaaagttgtgattttggcccc 9608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 19902 - 19968
Alignment:
Q  177 taaaataaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||| | |||||||||||||||||  || |||| |||   |||||||||||||||||||||    
T  19902 taaaataaaaaaagcttaatagcagttttaaccccctaaattttttaaagttgtgattttggcccct 19968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 3566 - 3623
Alignment:
Q  183 aaaataggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcc 240  Q
    |||||| |||||||||||||||| | | |||||||||| |||||||  ||||||||||    
T  3566 aaaataagcttaatagcagttttcgccttctaactttcacaaagttacgattttggcc 3623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 6061 - 6113
Alignment:
Q  190 gcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccc 242  Q
    ||||||||| |||||| | |||||||||||| | |||||||||||||| ||||    
T  6061 gcttaatagtagtttttgccctctaactttcacgaagttgtgattttgacccc 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 123 - 171
Alignment:
Q  188 aggcttaatagcagttttagtcctctaactttcccaaagttgtgatttt 236  Q
    |||||||||||||||||||| |  ||||||||| |||||||| ||||||    
T  123 aggcttaatagcagttttagcctcctaactttctcaaagttgcgatttt 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 17991 - 17935
Alignment:
Q  187 taggcttaatagcagttttagtcctctaactttcccaaagttgtgattttggcccct 243  Q
    |||||||||||||||||||  |||||||| | ||  ||||||| |||||||||||||    
T  17991 taggcttaatagcagttttgatcctctaagtatcataaagttgcgattttggcccct 17935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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