View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14868_low_2 (Length: 677)

Name: NF14868_low_2
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14868_low_2
NF14868_low_2
[»] chr6 (17 HSPs)
chr6 (429-605)||(16655733-16655909)
chr6 (429-605)||(16558397-16558571)
chr6 (478-605)||(16794930-16795057)
chr6 (480-601)||(16784994-16785115)
chr6 (480-611)||(16778898-16779029)
chr6 (478-605)||(17067201-17067328)
chr6 (478-605)||(16870249-16870376)
chr6 (478-550)||(17095709-17095781)
chr6 (399-462)||(16778799-16778862)
chr6 (478-605)||(16985167-16985291)
chr6 (288-354)||(16784790-16784856)
chr6 (407-454)||(17067115-17067162)
chr6 (480-529)||(16841550-16841599)
chr6 (417-451)||(16794860-16794894)
chr6 (478-540)||(18808561-18808623)
chr6 (480-529)||(16836439-16836488)
chr6 (111-151)||(17066854-17066894)
[»] scaffold0133 (6 HSPs)
scaffold0133 (399-605)||(6132-6347)
scaffold0133 (478-605)||(10568-10695)
scaffold0133 (399-451)||(10480-10532)
scaffold0133 (377-462)||(15746-15831)
scaffold0133 (12-72)||(5723-5782)
scaffold0133 (480-519)||(15867-15906)
[»] scaffold0256 (3 HSPs)
scaffold0256 (480-610)||(6881-7011)
scaffold0256 (375-439)||(6764-6828)
scaffold0256 (375-438)||(6609-6672)
[»] chr3 (5 HSPs)
chr3 (478-605)||(38941665-38941792)
chr3 (399-460)||(38941828-38941889)
chr3 (481-529)||(7055669-7055717)
chr3 (379-454)||(7055741-7055816)
chr3 (114-150)||(7056081-7056117)
[»] chr8 (2 HSPs)
chr8 (478-605)||(13375802-13375929)
chr8 (618-662)||(13375870-13375914)
[»] chr2 (2 HSPs)
chr2 (478-526)||(20151581-20151629)
chr2 (376-451)||(20151481-20151557)
[»] scaffold0144 (2 HSPs)
scaffold0144 (375-462)||(7362-7449)
scaffold0144 (478-548)||(4169-4239)
[»] scaffold0511 (1 HSPs)
scaffold0511 (478-540)||(3539-3601)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 7e-57; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 429 - 605
Target Start/End: Original strand, 16655733 - 16655909
Alignment:
Q  429 taaattaccacaaattgttggttttgttggttctacaaaaggtggcaaatcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcat 528  Q
    ||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16655733 taaattaccacaaattgttggctttgttgtttcttcaaaagatggcaaatcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcat 16655832  T
Q  529 ctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttccggagttgctgaaagttgtatggtagtga 605  Q
    ||||||||||||  |||||||  || |||   |||| ||||||||||  |||||||||||||||||| |||||||||    
T  16655833 ctcttctccaacttagggcaaccacaaattcttaacttttgcaagttttggagttgctgaaagttgtctggtagtga 16655909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 429 - 605
Target Start/End: Complemental strand, 16558571 - 16558397
Alignment:
Q  429 taaattaccacaaattgttggttttgttggttctacaaaaggtggcaaatcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcat 528  Q
    ||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  16558571 taaattaccacaaattgttggttttgttgtttccacagaagatggcaaatcaggaatgtgagctatcttatgccaatcgtcacctattc--ctcttgcat 16558474  T
Q  529 ctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttccggagttgctgaaagttgtatggtagtga 605  Q
    ||||||||||||| ||||||||   ||||||  ||  |||||||||| ||||| ||||||||||||| |||||||||    
T  16558473 ctcttctccaacatagggcaatcttcaatatacaatctttgcaagtttcggaggtgctgaaagttgtctggtagtga 16558397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 478 - 605
Target Start/End: Original strand, 16794930 - 16795057
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttcc 577  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||  ||||  ||||||||| |    
T  16794930 tcaggaacgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcatctccaacaaagggcaataatcaatacttaactcttgcaagtttc 16795029  T
Q  578 ggagttgctgaaagttgtatggtagtga 605  Q
    |||||||||||||||||| |||||||||    
T  16795030 ggagttgctgaaagttgtctggtagtga 16795057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 480 - 601
Target Start/End: Original strand, 16784994 - 16785115
Alignment:
Q  480 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttccgg 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | |||||  |||||||||||||||  ||    
T  16784994 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaacgatcaatacataacatttgcaagttttgg 16785093  T
Q  580 agttgctgaaagttgtatggta 601  Q
    |||||||||||||||| |||||    
T  16785094 agttgctgaaagttgtctggta 16785115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 480 - 611
Target Start/End: Original strand, 16778898 - 16779029
Alignment:
Q  480 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttccgg 579  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||  |||||||  |||   |||||||||  ||    
T  16778898 aggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctccaacttaggacaacgaccaatacttaaatattgcaagttttgg 16778997  T
Q  580 agttgctgaaagttgtatggtagtgattttaa 611  Q
    |||||||||||||||| ||| |||||||||||    
T  16778998 agttgctgaaagttgtctggcagtgattttaa 16779029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 605
Target Start/End: Original strand, 17067201 - 17067328
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttcc 577  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||  ||||||||||||||  |||||||| | ||| | ||| ||||||||||||||    
T  17067201 tcaggaatgtgagctattttatgccaatcttcaccttttcctatcttcaatctcttctccaacttagggcaatcatcaaaacgtatcatttgcaagttcc 17067300  T
Q  578 ggagttgctgaaagttgtatggtagtga 605  Q
    |||||||||||||||||| ||| |||||    
T  17067301 ggagttgctgaaagttgtctggcagtga 17067328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 478 - 605
Target Start/End: Complemental strand, 16870376 - 16870249
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttcc 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||  ||||     ||||||      
T  16870376 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacttagggcaatcaacaatacttaactccatcaagtttg 16870277  T
Q  578 ggagttgctgaaagttgtatggtagtga 605  Q
     ||||||||||||||||| |||||||||    
T  16870276 tgagttgctgaaagttgtctggtagtga 16870249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 17095709 - 17095781
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaat 550  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  17095709 tcaggaatgtgagctatctaatgccaatcttcacctattcctctcttacatctcttctccaacatagggcaat 17095781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 399 - 462
Target Start/End: Original strand, 16778799 - 16778862
Alignment:
Q  399 aaaggaataaaataaagagattcattcaattaaattaccacaaattgttggttttgttggttct 462  Q
    ||||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  16778799 aaaggaataaaattaagagattcattcaaatcaattaccactaattgttggttttgttggttct 16778862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 478 - 605
Target Start/End: Original strand, 16985167 - 16985291
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttcc 577  Q
    ||||||||||||||||||||||||   |||||||     ||||||||| ||||||||||||||| |||||||| |  ||||  |||| ||||||| || |    
T  16985167 tcaggaatgtgagctatcttatgctggtcttcacaa---cctctcttgtatctcttctccaacatagggcaatcaataataattaacttttgcaaatttc 16985263  T
Q  578 ggagttgctgaaagttgtatggtagtga 605  Q
    |||||||||||||| ||| |||||||||    
T  16985264 ggagttgctgaaagctgtctggtagtga 16985291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 16784790 - 16784856
Alignment:
Q  288 agggtcttgagctggggggttccagaattgcttccatgctgatttgatattcactgcacccattgtt 354  Q
    ||||| ||||| |||| ||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  16784790 agggtattgagatgggcggtgccagaattgcttccatgctgatttgatattctctgcacacattgtt 16784856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 407 - 454
Target Start/End: Original strand, 17067115 - 17067162
Alignment:
Q  407 aaaataaagagattcattcaattaaattaccacaaattgttggttttg 454  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||||    
T  17067115 aaaattaagagattcgttaaattaaattaccacaaattgttggttttg 17067162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 529
Target Start/End: Original strand, 16841550 - 16841599
Alignment:
Q  480 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatc 529  Q
    |||||||||||||||||||||||||||||| ||| || || |||||||||    
T  16841550 aggaatgtgagctatcttatgccaatcttcccctgtttctttcttgcatc 16841599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 16794860 - 16794894
Alignment:
Q  417 gattcattcaattaaattaccacaaattgttggtt 451  Q
    ||||| |||||||||||||||||||||||||||||    
T  16794860 gattcgttcaattaaattaccacaaattgttggtt 16794894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 540
Target Start/End: Complemental strand, 18808623 - 18808561
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaac 540  Q
    ||||||| |||||||||||| ||||||||||| ||  ||||| |||||||||  |||||||||    
T  18808623 tcaggaacgtgagctatcttttgccaatcttccccagttcctttcttgcatcgtttctccaac 18808561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 529
Target Start/End: Original strand, 16836439 - 16836488
Alignment:
Q  480 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatc 529  Q
    |||||||||||||||||| ||||||||||| ||| || || |||||||||    
T  16836439 aggaatgtgagctatcttgtgccaatcttcccctgtttctttcttgcatc 16836488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 17066854 - 17066894
Alignment:
Q  111 tctactaaacagagaactcattcctttaataagaagggatg 151  Q
    |||||||||||||| |  |||||||||||||||||||||||    
T  17066854 tctactaaacagagcaggcattcctttaataagaagggatg 17066894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 88; Significance: 6e-42; HSPs: 6)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 399 - 605
Target Start/End: Original strand, 6132 - 6347
Alignment:
Q  399 aaaggaataaaataaagagattcattcaattaaattaccacaaattgttggttttgttggt---------tctacaaaaggtggcaaatcaggaatgtga 489  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||         |||||| |||  ||| |   ||||||||||    
T  6132 aaaggaataaactaaagagattcattaaattaaattaccacaaattgttgattttgttggtgttgttgtttctacagaagaaggcgatataggaatgtga 6231  T
Q  490 gctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttccggagttgctgaa 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||     ||||  |||| ||||||||||  ||||||||||||    
T  6232 gctatcttatgccaatcttcacctattcctctcttgcatctcttctccaatataggacaacctgaaatagttaacgtttgcaagttttggagttgctgaa 6331  T
Q  590 agttgtatggtagtga 605  Q
    |||||| |||||||||    
T  6332 agttgtctggtagtga 6347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 478 - 605
Target Start/End: Original strand, 10568 - 10695
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttcc 577  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||  || |||   |||| ||||||||||      
T  10568 tcaggaatgtgagctatcttatgccaatcttcacctatacctctcttgcatctcttctccaacttagggcaaccacaaattcttaacttttgcaagtttt 10667  T
Q  578 ggagttgctgaaagttgtatggtagtga 605  Q
    |||||||||||||||||| ||| |||||    
T  10668 ggagttgctgaaagttgtctggcagtga 10695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 10480 - 10532
Alignment:
Q  399 aaaggaataaaataaagagattcattcaattaaattaccacaaattgttggtt 451  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10480 aaaggaataaaataaagagattcattcaattaaattaccactaattgttggtt 10532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 377 - 462
Target Start/End: Original strand, 15746 - 15831
Alignment:
Q  377 ttgatatattaagaaaaaacataaaggaataaaataaagagattcattcaattaaattaccacaaattgttggttttgttggttct 462  Q
    |||||||| ||||||||||   ||||||||||||| |||||| ||||| |||| ||||||||| | |||||| |||||||||||||    
T  15746 ttgatatagtaagaaaaaagcaaaaggaataaaattaagagactcatttaattcaattaccactacttgttgtttttgttggttct 15831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 5723 - 5782
Alignment:
Q  12 aagaatatataggacacatcttcaatagatagttgatatttcagattcctaaccaaataat 72  Q
    |||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||    
T  5723 aagaatatataggacacatcttcattagatagttgaaattt-atattcctaaccaaataat 5782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 519
Target Start/End: Original strand, 15867 - 15906
Alignment:
Q  480 aggaatgtgagctatcttatgccaatcttcacctattcct 519  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15867 aggaatgtgagctatcttatgccaatcttcaccttttcct 15906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 480 - 610
Target Start/End: Original strand, 6881 - 7011
Alignment:
Q  480 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttccgg 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||   |||  ||||||||||  ||    
T  6881 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacatagggcaaccacaaatccttaagctttgcaagttttgg 6980  T
Q  580 agttgctgaaagttgtatggtagtgatttta 610  Q
    |||||||||||||||| ||||||||||||||    
T  6981 agttgctgaaagttgtctggtagtgatttta 7011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 6764 - 6828
Alignment:
Q  375 atttgatatattaagaaaaaacataaaggaataaaataaagagattcattcaattaaattaccac 439  Q
    |||||||||| || |||||||   |||| |||||||| |||||||||||||||||||||||||||    
T  6764 atttgatatagtatgaaaaaagcgaaagaaataaaattaagagattcattcaattaaattaccac 6828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 438
Target Start/End: Original strand, 6609 - 6672
Alignment:
Q  375 atttgatatattaagaaaaaacataaaggaataaaataaagagattcattcaattaaattacca 438  Q
    |||||||||| ||||| | || | ||||||||| ||| ||||||||||||||||||||||||||    
T  6609 atttgatatagtaagatataatagaaaggaatataattaagagattcattcaattaaattacca 6672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 478 - 605
Target Start/End: Complemental strand, 38941792 - 38941665
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttcc 577  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  | ||||||  ||  ||||||||||      
T  38941792 tcaggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctccaacatagggcaagcaacaatatacaatctttgcaagtttt 38941693  T
Q  578 ggagttgctgaaagttgtatggtagtga 605  Q
    |||||||||||||||||| |||||||||    
T  38941692 ggagttgctgaaagttgtctggtagtga 38941665  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 38941889 - 38941828
Alignment:
Q  399 aaaggaataaaataaagagattcattcaattaaattaccacaaattgttggttttgttggtt 460  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38941889 aaaggaataaaataaagagattcattcaattaagttaccacaaattgttggttttgttggtt 38941828  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 529
Target Start/End: Complemental strand, 7055717 - 7055669
Alignment:
Q  481 ggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatc 529  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7055717 ggaatgtgagctatcttatgccaatcttcacctactcctctcttgcatc 7055669  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 379 - 454
Target Start/End: Complemental strand, 7055816 - 7055741
Alignment:
Q  379 gatatattaagaaaaaacataaaggaataaaataaagagattcattcaattaaattaccacaaattgttggttttg 454  Q
    |||||| |||||||||| | |||||||||| |||||| |||| ||| ||||||||||||||||| || || |||||    
T  7055816 gatatagtaagaaaaaagagaaaggaataatataaagggattgattaaattaaattaccacaaaatgatgtttttg 7055741  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 7056117 - 7056081
Alignment:
Q  114 actaaacagagaactcattcctttaataagaagggat 150  Q
    ||||||||||||| || ||||||||||||||||||||    
T  7056117 actaaacagagaagtctttcctttaataagaagggat 7056081  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 478 - 605
Target Start/End: Original strand, 13375802 - 13375929
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggcaataaccaatatgtaacatttgcaagttcc 577  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| || ||||  | |||||  |||| |||||||||| |    
T  13375802 tcaggtatgtgagctatcttatcccaatcttctcctattcctctcttgcatcgcttctccaacatagagcaactaacaatacttaacctttgcaagtttc 13375901  T
Q  578 ggagttgctgaaagttgtatggtagtga 605  Q
    |||||||||||||| ||| |||||||||    
T  13375902 ggagttgctgaaagctgtctggtagtga 13375929  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 618 - 662
Target Start/End: Original strand, 13375870 - 13375914
Alignment:
Q  618 gcaactactaatacttaacttttgcaagtttcggagttgttgaaa 662  Q
    |||||||  |||||||||| ||||||||||||||||||| |||||    
T  13375870 gcaactaacaatacttaacctttgcaagtttcggagttgctgaaa 13375914  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 20151581 - 20151629
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgc 526  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20151581 tcaggaatgttagctatcttatgccaatcttcacctattcctctcttgc 20151629  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 376 - 451
Target Start/End: Original strand, 20151481 - 20151557
Alignment:
Q  376 tttgatatattaagaaaaaac-ataaaggaataaaataaagagattcattcaattaaattaccacaaattgttggtt 451  Q
    ||||||||| ||||||||||  | | || ||||||| |||||||||| || ||||||||||||| ||| ||||||||    
T  20151481 tttgatatagtaagaaaaaaagagatagaaataaaacaaagagattcgttaaattaaattaccaaaaaatgttggtt 20151557  T

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Target: scaffold0144 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 462
Target Start/End: Original strand, 7362 - 7449
Alignment:
Q  375 atttgatatattaagaaaaaacataaaggaataaaataaagagattcattcaattaaattaccacaaattgttggttttgttggttct 462  Q
    ||||||| || ||||||||||   ||||||||||||  ||||||||||||||| | ||||||||| | |||||| |||||||||||||    
T  7362 atttgatgtagtaagaaaaaagcaaaaggaataaaaataagagattcattcaaatcaattaccactacttgttgtttttgttggttct 7449  T

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Target: scaffold0144; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 548
Target Start/End: Complemental strand, 4239 - 4169
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaacaaagggca 548  Q
    ||||||| ||||| |||||||||||||||||| ||  ||||| ||||||||| ||||||||||| ||||||    
T  4239 tcaggaacgtgagatatcttatgccaatcttccccggttcctttcttgcatcgcttctccaacatagggca 4169  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 540
Target Start/End: Complemental strand, 3601 - 3539
Alignment:
Q  478 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctccaac 540  Q
    ||||||| |||||||||||| ||||||||||| ||  ||||| |||||||||  |||||||||    
T  3601 tcaggaacgtgagctatcttttgccaatcttccccagttcctttcttgcatcgtttctccaac 3539  T

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