View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_low_3 (Length: 592)
Name: NF14868_low_3
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 68 - 574
Target Start/End: Complemental strand, 36842190 - 36841684
Alignment:
| Q |
68 |
aaggtatgataacacatgaaccggagattttggaaaaatatcagcaagaagttttctgtaacgtttgactggctgtcttgatcttgacctcaaagcagga |
167 |
Q |
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| T |
36842190 |
aaggtatgataacacatgaaccggggattttggaaaaatatcagcaagaagttttctgtaacatttgactggctgtcttgatcttgacctcaaagcagga |
36842091 |
T |
|
| Q |
168 |
caagtaaacacacatgctctcacaagctgggaagatattccttgagacttatgtattgggttcaccgtggttctcattctctttttcactattttgtata |
267 |
Q |
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| T |
36842090 |
caagtaaacacacatgctctcacaagctgggaagatattccttgagacttatgtattgggttcactgtggttctcattctctttttcactattttgtata |
36841991 |
T |
|
| Q |
268 |
tgtatatgtcttgtgttctttgttttttatcggttcttccgattgaagcttggtacttatttcggtttgttcactttctgcaagtgatcaacttatcagt |
367 |
Q |
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| T |
36841990 |
tgtatatgtattgtgttctttgttttttatcggttcttccgattgaagcttggtacttatttcggtttgttcactttctgcaagtgatcaacttatcagt |
36841891 |
T |
|
| Q |
368 |
gcttttttgggtttagttattcagttttacggctctgcatctataatggattgtgaatgtaacttcgttgtttttattggattgtcgttatttttggatc |
467 |
Q |
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| T |
36841890 |
gcttttttgggtttagttattcagttttacggctctgcatctagaatggattgtgaatgtaacttcgttgtttttattggattgtcgttatttttggatc |
36841791 |
T |
|
| Q |
468 |
aacaattaaaggaaacatatttctgtaaacgacacaattttgatctggaattgaaagttatattggttgtcaatctttgtagatttctctttaattatgt |
567 |
Q |
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| T |
36841790 |
aacaattaaaggaaacgtgtttctgtaaacgacacaattttgatctggaattgaaagttatattggttgtcaatctttgtagatttctctttaattatgt |
36841691 |
T |
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| Q |
568 |
gatttgt |
574 |
Q |
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| T |
36841690 |
gatttgt |
36841684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 37513910 - 37514055
Alignment:
| Q |
68 |
aaggtatgataacacatgaaccggagattttggaaaaatatcagcaagaagttttctgtaacgtttgactggctgtcttgatcttgacctcaaagcagga |
167 |
Q |
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| T |
37513910 |
aaggtatgataacacacgaaccggggattttggaaagatatcagcaagaagttttctgtaacgtttgactggttgtcttgatcttgacctcaaagcagga |
37514009 |
T |
|
| Q |
168 |
caagtaaacacacatgctctcacaagctgggaagatattccttgaga |
214 |
Q |
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| T |
37514010 |
c-agcaaacacacatgctctcacaagctgggaagatcttccttgaga |
37514055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36842297 - 36842231
Alignment:
| Q |
1 |
cagcacatacatttctaatcgaatgcatgtccaatgtgcgacacacgtggttacattcaattactcc |
67 |
Q |
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| T |
36842297 |
cagcacaaacatttcaaatcgaatgcatgtccaatgtgcgacacacgtggttacattcaattactcc |
36842231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 461 - 547
Target Start/End: Complemental strand, 18929736 - 18929650
Alignment:
| Q |
461 |
ttggatcaacaattaaaggaaacatatttctgtaaacgacacaattttgatctggaattgaaagttatattggttgtcaatctttgt |
547 |
Q |
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| T |
18929736 |
ttggatcaacaaattaaggaaacgtatttctgtaaagcacacaattttgatttggaattgaaagttatattggttgttgatctttgt |
18929650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37513803 - 37513869
Alignment:
| Q |
1 |
cagcacatacatttctaatcgaatgcatgtccaatgtgcgacacacgtggttacattcaattactcc |
67 |
Q |
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||||||| ||||||| |||||||||||||||| || | |||||||| ||||||||||||||||||| |
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| T |
37513803 |
cagcacaaacatttcaaatcgaatgcatgtccgatatccgacacacaaggttacattcaattactcc |
37513869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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