View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_low_4 (Length: 477)
Name: NF14868_low_4
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 8168258 - 8168715
Alignment:
| Q |
1 |
ttttaattgctattcattgaattttagatctctcctacttttattgagtgaatgatcattttggttcctgattctgcacctcgctgtcataatgtctttg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8168258 |
ttttaattgctattcattgaattttagatctttcctacttttattgggtgaatgatcattttggttcctgattctgcacctcgctgtcataacgtctttg |
8168357 |
T |
|
| Q |
101 |
gctcatgattaaatacaaaatagtatctggatatatacttccgttatcagttttgtccctgacatttaaaacttcatgaggtgacaaatgttttgggccg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8168358 |
gctcatgattaaatacaaaatagtctctggatatgtacttccattatcagttttgtccctgacatttaaaacttcatgaggtgacaaatgttttgggccg |
8168457 |
T |
|
| Q |
201 |
acgaggtaaatgacgtggcacaatgactaaagtgaaagttgagaaccgaactgaagaacaaaaacatttttgaatctcaactctcaaatccctaaacccc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8168458 |
acgaggtaaatgacgtggcacaatgactaaagtgaaagttgagaacctaactgaagaacaaaaacatttttgaatctcaactctcaaatccctaaacccc |
8168557 |
T |
|
| Q |
301 |
taaatctcaaatccttaatagtaattttgaggaattggtttatatgtggccttgcatgtttacttggttctgttgtgtgattgaacaagtttgtccaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8168558 |
taaatctcaaatccttaatagtaattttgaggaattggtttatatgtggccttgcatgtttacttggttctgttgtgtgattcaacaagtttgtccaaca |
8168657 |
T |
|
| Q |
401 |
aaccatgttgaattatgtctcatatgatctattttgttttatcatcactcttctaattat |
460 |
Q |
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| T |
8168658 |
aaccatgttgaattatgtctc--atgatctattttgttttatcatcactcttctgattat |
8168715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 329 - 458
Target Start/End: Original strand, 37566438 - 37566566
Alignment:
| Q |
329 |
gaggaattggtttatatgtggccttg-catgtttacttggttctgttgtgtgattgaacaagtttgtccaacaaaccatgttgaattatgtctcatatga |
427 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||| |||||| || | |
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| T |
37566438 |
gaggaattggtttataagtagccttaacatgtttacttggttctgtcatgtaattcaacaagtttgtccaacaagccatgttgaattaggtctcacat-a |
37566536 |
T |
|
| Q |
428 |
tctattttgttttatcatcactcttctaatt |
458 |
Q |
| |
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|||| ||||||| |||||||| ||||||||| |
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| T |
37566537 |
tcta-tttgtttaatcatcacacttctaatt |
37566566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 52316999 - 52317051
Alignment:
| Q |
68 |
ctgattctgcacctcgctgtcata-atgtctttggctcatgattaaatacaaa |
119 |
Q |
| |
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||||||||||| |||||||||||| | |||| || |||||||||||||||||| |
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| T |
52316999 |
ctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaa |
52317051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 8569455 - 8569535
Alignment:
| Q |
94 |
gtctttggctcatgattaaatacaaaatagtatctggatatatacttccgttatcagttttgtccctgacatttaaaactt |
174 |
Q |
| |
|
||||||| |||||||||||||||||| |||| | || || | |||| |||||||||||| ||||||||| || ||||||| |
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| T |
8569455 |
gtctttgactcatgattaaatacaaagtagtttatgaatgtgcactttcgttatcagtttagtccctgacgttaaaaactt |
8569535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 7509341 - 7509309
Alignment:
| Q |
282 |
tctcaaatccctaaacccctaaatctcaaatcc |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
7509341 |
tctcaaatccctaaacccctaaatctcaaatcc |
7509309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 4087348 - 4087460
Alignment:
| Q |
176 |
atgaggtgacaaatgttttgggccgacgaggtaaatgacgtggcacaatgactaaagtgaaagttgagaaccgaactgaagaacaaaaacatttttgaat |
275 |
Q |
| |
|
|||| |||||||||||||||| | | |||||||||| ||| |||| || |||||||||| | || ||||||| ||||| ||||||| | ||||||| |
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| T |
4087348 |
atgacgtgacaaatgttttggactaataaggtaaatgatgtgacacatggattaaagtgaaaatagataaccgaattgaaggacaaaaatagctttgaat |
4087447 |
T |
|
| Q |
276 |
ctcaactctcaaa |
288 |
Q |
| |
|
||||| ||||||| |
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|
| T |
4087448 |
ctcaaatctcaaa |
4087460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 6612438 - 6612491
Alignment:
| Q |
67 |
cctgattctgcacctcgctgtcataa-tgtctttggctcatgattaaatacaaa |
119 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||| || |||||||||||||||||| |
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|
| T |
6612438 |
cctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaa |
6612491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 5782422 - 5782486
Alignment:
| Q |
56 |
tcattttggttcctgattctgcacctcgctgtcata-atgtctttggctcatgattaaatacaaa |
119 |
Q |
| |
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||||||| || ||||| ||||||||||||||||| | | |||| || |||||||||||||||||| |
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|
| T |
5782422 |
tcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaa |
5782486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 31239856 - 31239820
Alignment:
| Q |
282 |
tctcaaatccctaaacccctaaatctcaaatccttaa |
318 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||| |
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| T |
31239856 |
tctcaaatccttaaatccctaaatctcaaatccttaa |
31239820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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