View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_low_6 (Length: 422)
Name: NF14868_low_6
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 8167840 - 8168194
Alignment:
| Q |
15 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtcgatttcgttaacaatttgaaaagatatcccaagtactctgctttttggctgca |
114 |
Q |
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| T |
8167840 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtcgatttcgttaacaatttgaagagatatcccaagtactctgctttttggctgca |
8167939 |
T |
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| Q |
115 |
aaagtttcttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttcccatgttgtttttcgaatttccaatgtcaccttagtata |
214 |
Q |
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| T |
8167940 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttgtcgaatttccaatgtcaccttagtata |
8168039 |
T |
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| Q |
215 |
ttacttgctttcatatgtattgagataattggtgataccaattatgtaatgctgaaatgagtaagttaatatcaataaataaattgttggaacaactctc |
314 |
Q |
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| T |
8168040 |
ttacttgctttcatatgtattgagataattggtgataccaattatgtaatgctgaaatgagtaagttaatatcaataaataaattgttggaacaactctc |
8168139 |
T |
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| Q |
315 |
ttccattctctagcaactctcttttttgggaaggattgtttttagtttcacattt |
369 |
Q |
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| T |
8168140 |
ttccattctctagcaactctcttttttgtgaaggattgtttttagtttcacattt |
8168194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 8143018 - 8143348
Alignment:
| Q |
15 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtcgatttcgttaacaatttgaaaagatatcccaagtactctgctttttggctgca |
114 |
Q |
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| T |
8143018 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtggatttcgttaacaaattgaagagatatcccaagtactctgctttttggctgca |
8143117 |
T |
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| Q |
115 |
aaagtttcttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttcccatgttgtttttcgaatttccaatgtcaccttagtata |
214 |
Q |
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| T |
8143118 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttgtcgaatttccagtgtcaccttagtatg |
8143217 |
T |
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| Q |
215 |
ttacttgctttcatatgtattgagataattggtgataccaattatgta------------atgctgaaatgagtaagttaatatcaat-aaataaattgt |
301 |
Q |
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| T |
8143218 |
ttacttgcgctcatatgtattgagataattggtgataccaattaaataaaccttaagggcatgctgaaatgagtgagtcaatataaatgaaataaattgt |
8143317 |
T |
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| Q |
302 |
tggaacaactctcttccattctctagcaact |
332 |
Q |
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| T |
8143318 |
tggaacaactatctttcattctctagcaact |
8143348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 8168220 - 8168275
Alignment:
| Q |
367 |
tttcgttacatgagtttccgttgtttatgaacttattattttaattgctattcatt |
422 |
Q |
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| T |
8168220 |
tttcgttacatgagtttccgctgtttatgaacttattattttaattgctattcatt |
8168275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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