View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_low_8 (Length: 403)
Name: NF14868_low_8
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 34704542 - 34704902
Alignment:
| Q |
13 |
attctcatggttttcttgttgatgaaacctattaagtctgaacattcatttttacgtcccaaaaagtcttatactattttcagtttcaaacnnnnnnnct |
112 |
Q |
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| T |
34704542 |
attctcatggttttcttgttggtgaaacctattaaatccgaacattcatttttacgtcccaaaaagtcttatactattttcagtttcaaactttttttct |
34704641 |
T |
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| Q |
113 |
agctttatctttccagcaaccttccttattttcacttattggaatgttgcctaagattttgttaagcactataaaactagattaggtgaatgcatttcct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34704642 |
agctttatctttccagcaaccttccttattttcacttattggaatgttgcctaagattttgttaagcactataaaactagattaggtgaatgcttttcct |
34704741 |
T |
|
| Q |
213 |
aaacaaaagaaagaaatagaggtttgtcataagactattttctatgacctcaagactaaagtaaaattactcactcatcagaaggatgagctacctaaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34704742 |
aaacaaaagaaagaaatagaggtttgtcataagactattttctatgacctcaagactaaagtaaaattgctcactcatcagaaggatgagctacctaaat |
34704841 |
T |
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| Q |
313 |
aaaacagagagagtgcacagagtaaaaacaataaaaatttattaaaataacaatgcaacta |
373 |
Q |
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| T |
34704842 |
aaaacagagagagtgcacagagtaaaaacaataaaaatttattaaaataacaatgcaacta |
34704902 |
T |
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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 18978386 - 18978303
Alignment:
| Q |
142 |
tttcacttattggaatgttgcctaagattttg-ttaagcactataaaactagattaggtgaatgcatttcctaaacaaaagaaa |
224 |
Q |
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| T |
18978386 |
tttcacttatcggaaggttgcctatgattttgattaagtactataaaactagattaggcaaatgcatttcttaagcaaaagaaa |
18978303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 386
Target Start/End: Complemental strand, 18978209 - 18978121
Alignment:
| Q |
298 |
atgagctacctaaataaaacagagagagtgcacagagtaaaaacaataaaaatttattaaaataacaatgcaactacaatagatttttg |
386 |
Q |
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| T |
18978209 |
atgagctacctaaacaaaataaagagaatgcaaaaagtaaaaataagaaaactctattaaaacaacaatgcaagtacaagaggtttttg |
18978121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 25027403 - 25027450
Alignment:
| Q |
185 |
aaaactagattaggtgaatgcatttcctaaacaaaagaaagaaataga |
232 |
Q |
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| T |
25027403 |
aaaactagattaggtgaatacacttcctgcacaaaagaaagaaataga |
25027450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 8239843 - 8239749
Alignment:
| Q |
111 |
ctagctttatctttccagcaaccttccttat-tttcacttattggaatgttgcctaagattttg-ttaagcactataaaactagattaggtgaatg |
204 |
Q |
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| T |
8239843 |
ctagctttat-tttccagcaaacttccttctctttcacttgttgaaattttgcctaacattttgattaagcattataaatctagattaggtgaatg |
8239749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 33732077 - 33732116
Alignment:
| Q |
190 |
tagattaggtgaatgcatttcctaaacaaaagaaagaaat |
229 |
Q |
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| T |
33732077 |
tagattaggtgaatgcatttccttaacaaaagaaagaaat |
33732116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 19983902 - 19983865
Alignment:
| Q |
196 |
aggtgaatgcatttcctaaacaaaagaaagaaatagag |
233 |
Q |
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| T |
19983902 |
aggtgaatgcatttcctaagcaaaagaaagaaatagag |
19983865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 19028360 - 19028406
Alignment:
| Q |
183 |
ataaaactagattaggtgaatgcatttcctaaacaaaagaaagaaat |
229 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
19028360 |
ataaaactagattaagtgaatgcatttcctaatcaaaagaaagaaat |
19028406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 9604600 - 9604494
Alignment:
| Q |
195 |
taggtgaatgcatttcctaaacaaaagaaagaaatagag----------gtttgtcataagactattttctatgacctcaagactaaagtaaaattactc |
284 |
Q |
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|||||||||||| | |||||||||||||||||||||||| ||||||||||| |||| |||| || ||||||||| |||||| ||| ||||| |
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| T |
9604600 |
taggtgaatgcactccctaaacaaaagaaagaaatagagatcatagaaagtttgtcataaaactactttccataacctcaagattaaagt-aaactactc |
9604502 |
T |
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| Q |
285 |
actcatca |
292 |
Q |
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|||||||| |
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| T |
9604501 |
actcatca |
9604494 |
T |
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