View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14868_low_9 (Length: 342)
Name: NF14868_low_9
Description: NF14868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14868_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 37118792 - 37118492
Alignment:
| Q |
10 |
cgagtgagatgaaataagtgagagggagattgcttcttttactctcagactagagaatattacaataaatcttgtatcattgcaagtgtactaaagagaa |
109 |
Q |
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| T |
37118792 |
cgagtgatatgaaataagtgagagggagattgcttcttttactctgagactagagaatattacaataaatcttgtatcattgcaagtgtactgaagagaa |
37118693 |
T |
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| Q |
110 |
cttgattaatgtacacatgctcttataactcttcgtagaagagannnnnnnnnctacctagattcaagttcatgacttagctttttcaagatttatcttt |
209 |
Q |
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| T |
37118692 |
cttgattaatgtacacatgctcttataactcttcgtagaagagatttttttttctacctagattcaagttcatga-----ctttttcaagatttatcttt |
37118598 |
T |
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| Q |
210 |
tatgatcaaccttttgcaatctcttttccatgaacctaacatccatttttctattcaatatgagattcttatctacacaaaaataatcccccctcctctc |
309 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37118597 |
tatgatcaaccttttgcaa-------tccatgaacctaacatccatttttctattcaatatgagattcttacctacacaaaaataatcccccctcctctc |
37118505 |
T |
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| Q |
310 |
aaatgtgagctct |
322 |
Q |
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||||||||||||| |
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| T |
37118504 |
aaatgtgagctct |
37118492 |
T |
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