View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14869_high_7 (Length: 418)

Name: NF14869_high_7
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14869_high_7
NF14869_high_7
[»] chr2 (6 HSPs)
chr2 (365-400)||(35918850-35918885)
chr2 (211-256)||(35543693-35543738)
chr2 (211-256)||(35561435-35561480)
chr2 (228-268)||(34989409-34989449)
chr2 (211-253)||(35530258-35530300)
chr2 (219-275)||(35887109-35887163)


Alignment Details
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 400
Target Start/End: Original strand, 35918850 - 35918885
Alignment:
Q  365 ttccatagtgtttcttgacattaattacagaaaatc 400  Q
    ||||||||||||||||||||||||||||||||||||    
T  35918850 ttccatagtgtttcttgacattaattacagaaaatc 35918885  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 35543738 - 35543693
Alignment:
Q  211 gttaacagttattgatcagttggcagttttctgttatggtatagtt 256  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||||    
T  35543738 gttaacagctattgattagttggtagttttctgttatggtatagtt 35543693  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 35561480 - 35561435
Alignment:
Q  211 gttaacagttattgatcagttggcagttttctgttatggtatagtt 256  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||||    
T  35561480 gttaacagctattgattagttggtagttttctgttatggtatagtt 35561435  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 34989409 - 34989449
Alignment:
Q  228 agttggcagttttctgttatggtatagttgatcagttagaa 268  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  34989409 agttggcagttttctgttatggtatagttgattggttagaa 34989449  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 35530300 - 35530258
Alignment:
Q  211 gttaacagttattgatcagttggcagttttctgttatggtata 253  Q
    |||||||| ||||||| |||||| |||||||||||||||||||    
T  35530300 gttaacagctattgattagttggtagttttctgttatggtata 35530258  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 35887109 - 35887163
Alignment:
Q  219 ttattgatcagttggcagttttctgttatggtatagttgatcagttagaagcagtta 275  Q
    ||||||||||||||| | ||||| ||||||||||  ||||| |||||||||||||||    
T  35887109 ttattgatcagttggaacttttcagttatggtat--ttgattagttagaagcagtta 35887163  T

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