View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14869_high_8 (Length: 413)

Name: NF14869_high_8
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14869_high_8
NF14869_high_8
[»] chr4 (21 HSPs)
chr4 (11-413)||(2471820-2472222)
chr4 (204-405)||(2460515-2460719)
chr4 (205-340)||(2367678-2367813)
chr4 (223-340)||(12124764-12124881)
chr4 (205-326)||(2373256-2373376)
chr4 (226-326)||(2621177-2621277)
chr4 (210-349)||(2547459-2547598)
chr4 (225-329)||(2491070-2491174)
chr4 (276-350)||(2381369-2381443)
chr4 (248-329)||(2486272-2486353)
chr4 (223-340)||(12126820-12126937)
chr4 (225-348)||(2525699-2525822)
chr4 (207-329)||(5102100-5102222)
chr4 (11-61)||(2460370-2460420)
chr4 (281-329)||(553992-554040)
chr4 (281-329)||(1547469-1547517)
chr4 (357-405)||(2467676-2467724)
chr4 (195-323)||(2519145-2519273)
chr4 (211-251)||(2625451-2625491)
chr4 (360-412)||(5035810-5035862)
chr4 (275-343)||(6007657-6007725)
[»] chr1 (2 HSPs)
chr1 (210-350)||(15837955-15838095)
chr1 (280-329)||(33161430-33161479)
[»] chr8 (1 HSPs)
chr8 (279-405)||(39516853-39516979)
[»] chr5 (2 HSPs)
chr5 (220-329)||(39252916-39253025)
chr5 (274-335)||(32268761-32268822)
[»] chr7 (1 HSPs)
chr7 (225-323)||(2576415-2576513)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 2471820 - 2472222
Alignment:
11 tcaatttcttcatcttttcagacagagctcgcaatccatcttcaggaatattgaaggcacggtaggagagatggggcgatttgatgtatgaattagggaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
2471820 tcaatttcttcatcttttcagacagagctcgcaatccatcttcaggaatattggaggcacggtaggagagatggagcgatttgatgtatgaattagggaa 2471919  T
111 agtggaaagacggagcgatttgatgtctgataaattagggaaagtggagatttcaacaagaagggcatcgaggtcaattctttcggaaaagagagagatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2471920 agtggaaagacggagcgatttgatgtctgataaattagggaaagtggagatttcaacaagaagggcatcgaggtcaattctttcggaaaagagagagatg 2472019  T
211 tcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatgg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
2472020 tcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatgg 2472119  T
311 agaaaaactgtttggagaccatggaaagagatttgaaagtctggttgttgtcgtcgaggaatttgaagatgctctcccatatttcctctggtaaacttga 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
2472120 agaaaaactgtttggagaccatggaaagagatttgaaagtctggttgttgtcgtcaaggaatttgaagatgctctcccatatttcctctggtaaacttga 2472219  T
411 acc 413  Q
    |||    
2472220 acc 2472222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 204 - 405
Target Start/End: Original strand, 2460515 - 2460719
Alignment:
204 agagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacag---tagattgtgagggagaatcggagacga 300  Q
    |||||||||||||||||| |||||||| |||||||  |||| | || |||||||||| |||| |  |  |   | |||| |||| |||||||||||||||    
2460515 agagatgtcgagagaggttaggttaggaaacctttgaaagatgagacgaaggaaaggaattgctctatcggttttgattttgagagagaatcggagacga 2460614  T
301 ttggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagtctggttgttgtcgtcgaggaatttgaagatgctctcccatatttcctctg 400  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
2460615 ttggtgatggagaggaactgtttggagaccatggagagagatttgaaagtgtggtggttgtcgtcgaggaatttgaagatgctctcccatatttcctctg 2460714  T
401 gtaaa 405  Q
    |||||    
2460715 gtaaa 2460719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 340
Target Start/End: Complemental strand, 2367813 - 2367678
Alignment:
205 gagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattgg 304  Q
    |||| |||||| || |||||||| |||||||||| ||| ||| ||| ||||||||||||||||| |  | | ||||  | ||||||||||||||| ||||    
2367813 gagaagtcgagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttgg 2367714  T
305 tgatggagaaaaactgtttggagaccatggaaagag 340  Q
    ||||||||| ||| ||||||||||| ||||||||||    
2367713 tgatggagagaaattgtttggagacgatggaaagag 2367678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 340
Target Start/End: Original strand, 12124764 - 12124881
Alignment:
223 aggttagggaacctttcgaagaggtgatgaaggaaagggattgtttca-cagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgt 321  Q
    ||||| |||||||||| ||||||| | | ||||||||||||||||||| ||| |||||| || ||| ||| ||||||| ||||||||||||| ||| |||    
12124764 aggttggggaacctttggaagaggcggtcaaggaaagggattgtttcatcag-agattgcgatggaaaattggagacggttggtgatggagagaaattgt 12124862  T
322 ttggagaccatggaaagag 340  Q
    |||||||| ||||| ||||    
12124863 ttggagacaatggagagag 12124881  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 326
Target Start/End: Complemental strand, 2373376 - 2373256
Alignment:
205 gagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattgg 304  Q
    |||| |||||| ||||||||||| |||||||||| ||||||| ||| ||||||||| ||||||| |  | | ||||  | ||||||||||||| ||||||    
2373376 gagaggtcgagggaggtgaggttggggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattgg 2373278  T
305 tgatggagaaaaactgtttgga 326  Q
    ||||||||| ||| ||||||||    
2373277 tgatggagagaaattgtttgga 2373256  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 326
Target Start/End: Complemental strand, 2621277 - 2621177
Alignment:
226 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttgg 325  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| || ||||| ||||||||||| |||||||||||||    
2621277 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 2621178  T
326 a 326  Q
    |    
2621177 a 2621177  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 349
Target Start/End: Original strand, 2547459 - 2547598
Alignment:
210 gtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatg 309  Q
    |||||| || |||| |||||||||||||| ||||| |||| ||||| || ||||  | | || | |||||||||  ||||| |||||||| |||||||||    
2547459 gtcgagtgatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatg 2547558  T
310 gagaaaaactgtttggagaccatggaaagagatttgaaag 349  Q
    || | ||||||||||||||| ||||| || ||||| ||||    
2547559 gacagaaactgtttggagacgatggagagcgattttaaag 2547598  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 329
Target Start/End: Original strand, 2491070 - 2491174
Alignment:
225 gttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttg 324  Q
    ||||||||||||||| |||||  ||| |||||||||||||||| ||  | |||||||||  || ||||||||||| || |||||||| | |||||||||     
2491070 gttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgtttt 2491169  T
325 gagac 329  Q
    |||||    
2491170 gagac 2491174  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 350
Target Start/End: Complemental strand, 2381443 - 2381369
Alignment:
276 gattgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagt 350  Q
    |||| ||| ||||||||||||||  |||||||| ||||  |||||||||||||| ||||||||||| ||||||||    
2381443 gattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagt 2381369  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 2486272 - 2486353
Alignment:
248 gatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagac 329  Q
    |||||||||||||||||||||    | |||||||||  |||||||||||||| ||||||||||| | ||||||||| |||||    
2486272 gatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagac 2486353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 340
Target Start/End: Original strand, 12126820 - 12126937
Alignment:
223 aggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtt 322  Q
    ||||| |||||||||| ||| ||| | | ||||||||||||| |||||    ||| || || ||||||| ||||||| ||||||||||||| ||| ||||    
12126820 aggttggggaaccttttgaataggcggtcaaggaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtt 12126919  T
323 tggagaccatggaaagag 340  Q
    ||||||| ||||| ||||    
12126920 tggagacaatggagagag 12126937  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 348
Target Start/End: Original strand, 2525699 - 2525822
Alignment:
225 gttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttg 324  Q
    ||||||||||||||| |||||  ||| ||| |||||||| ||| ||  | |||||||||   ||||||| ||||  ||||||||||| | |||||||||     
2525699 gttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgtttt 2525798  T
325 gagaccatggaaagagatttgaaa 348  Q
    ||||| | ||| |||||| |||||    
2525799 gagacgagggagagagatctgaaa 2525822  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 329
Target Start/End: Complemental strand, 5102222 - 5102100
Alignment:
207 gatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttca-cagtagattgtgagggagaatcggagacgattggt 305  Q
    ||||| ||| || |||| |||||||||||||||||| ||| || ||| ||||||||| |||  | |||| ||||||||  |||||||| |||| ||| ||    
5102222 gatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagt-gattgtgaccgagaatcgaagactattagt 5102124  T
306 gatggagaaaaactgtttggagac 329  Q
    ||| || ||||||||||| |||||    
5102123 gatagacaaaaactgtttcgagac 5102100  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 2460370 - 2460420
Alignment:
11 tcaatttcttcatcttttcagacagagctcgcaatccatcttcaggaatat 61  Q
    ||||||| ||||||||||  |||||| |||||||||||||||||| |||||    
2460370 tcaattttttcatctttttggacagaactcgcaatccatcttcagaaatat 2460420  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 553992 - 554040
Alignment:
281 tgagggagaatcggagacgattggtgatggagaaaaactgtttggagac 329  Q
    |||| ||||||| |||||||||||||||||| || |||||||| |||||    
553992 tgagtgagaatctgagacgattggtgatggataagaactgtttagagac 554040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 1547517 - 1547469
Alignment:
281 tgagggagaatcggagacgattggtgatggagaaaaactgtttggagac 329  Q
    |||| |||||||||||||| |||||||||||||  || |||||||||||    
1547517 tgagagagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 2467676 - 2467724
Alignment:
357 gttgtcgtcgaggaatttgaagatgctctcccatatttcctctggtaaa 405  Q
    |||||||| ||||||||||||||||| ||||||||  |||| |||||||    
2467676 gttgtcgttgaggaatttgaagatgcgctcccataactcctttggtaaa 2467724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 2519145 - 2519273
Alignment:
195 ggaaaagagagagatgtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcgg 294  Q
    |||| |||||| ||||| ||| || || | ||| |||||||| || |||||  ||||||||||||||||||||| |    |||||||||  ||| ||||     
2519145 ggaagagagagtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcga 2519244  T
295 agacgattggtgatggagaaaaactgttt 323  Q
    | ||| ||||||||||| | |||||||||    
2519245 aaacggttggtgatggacagaaactgttt 2519273  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 2625491 - 2625451
Alignment:
211 tcgagagaggtgaggttagggaacctttcgaagaggtgatg 251  Q
    ||||| || ||||||||||||||||||| ||||||||||||    
2625491 tcgagggatgtgaggttagggaacctttggaagaggtgatg 2625451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 5035810 - 5035862
Alignment:
360 gtcgtcgaggaatttgaagatgctctcccatatttcctctggtaaacttgaac 412  Q
    ||||| |||||||||||||||| | |||||||  |||||||||||| ||||||    
5035810 gtcgttgaggaatttgaagatgttttcccataaatcctctggtaaatttgaac 5035862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 6007657 - 6007725
Alignment:
275 agattgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagaccatggaaagagatt 343  Q
    |||| ||||| |||||||||||||  |||||||||||||  |||||||| ||||| | ||| |||||||    
6007657 agatagtgagagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 350
Target Start/End: Complemental strand, 15838095 - 15837955
Alignment:
210 gtcgagagaggtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatg 309  Q
    ||||||||| || |||||||||||||||| |||||||| | ||| |||||||||||||| |     |||| ||||||||||||||||||| |||||||||    
15838095 gtcgagagatgttaggttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatg 15837996  T
310 gagaaaaactgtttggagaccatggaaagagatttgaaagt 350  Q
    |||| |||||||||||||||||| || || || ||||||||    
15837995 gagagaaactgtttggagaccatcgagagggacttgaaagt 15837955  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 33161430 - 33161479
Alignment:
280 gtgagggagaatcggagacgattggtgatggagaaaaactgtttggagac 329  Q
    ||||| |||||||| |||| ||| |||||||||| |||||||||||||||    
33161430 gtgagtgagaatcgaagactattagtgatggagagaaactgtttggagac 33161479  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 405
Target Start/End: Original strand, 39516853 - 39516979
Alignment:
279 tgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagtctggttgttgtcgtcgaggaatttgaag 378  Q
    ||||| |||||||| |||||| |||||||||| || ||| ||| ||||||| ||||| ||||| |||||||| |||||||   |||||||||||||||||    
39516853 tgtgacggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagtgtggttgtcaccgtcgaggaatttgaag 39516952  T
379 atgctctcccatatttcctctggtaaa 405  Q
    ||   ||||||||| ||||| ||||||    
39516953 atagactcccatatatcctccggtaaa 39516979  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 39253025 - 39252916
Alignment:
220 gtgaggttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaact 319  Q
    |||||||| ||||||||||| |||||  || ||||| |||||||||||| |  |  ||||| ||||||| |||||||||| ||| ||||||||| |||||    
39253025 gtgaggttggggaacctttcaaagagaagaggaagggaagggattgtttgatcggtgattgcgagggaggatcggagacggttgctgatggagagaaact 39252926  T
320 gtttggagac 329  Q
    || |||||||    
39252925 gtatggagac 39252916  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 32268761 - 32268822
Alignment:
274 tagattgtgagggagaatcggagacgattggtgatggagaaaaactgtttggagaccatgga 335  Q
    |||| |||||| |||||||| ||||| |||||||||||||  |||||||||||||| |||||    
32268761 tagactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagacgatgga 32268822  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 2576513 - 2576415
Alignment:
225 gttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcggagacgattggtgatggagaaaaactgttt 323  Q
    |||||||| ||||||||||||| ||  || ||||||||| |||  |  |  ||||||||  |||||||| ||||||||||||||||| |||||||||||    
2576513 gttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

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