View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14869_high_9 (Length: 391)
Name: NF14869_high_9
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 38666323 - 38666669
Alignment:
| Q |
12 |
gaatatggggtgtggaaggttgtccatagcaaagctaacatgaaaaggaagcagaaggaatctaggccactccaaagggcatcttgattctcatctaccc |
111 |
Q |
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| T |
38666323 |
gaatatggggtgtggaaggttgtccatagcaaagctaacattaaaaggaagcagaaggaatctaggccaccccaaagggcatcttgattctcatctaccc |
38666422 |
T |
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| Q |
112 |
actaccatgtttgtccctgcc--------ctaatatactttatttctcatgaataaaaacatctnnnnnnngaaaacaaatactactttttctatccatt |
203 |
Q |
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| T |
38666423 |
actaccatgtttgcccctgccctaatatactaatatactttatttctcatgaataaaaacatctaaaaaaagaaaacaaatactactttttctatccatt |
38666522 |
T |
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| Q |
204 |
gtgatgcacgacaagataaagtaaatgtttcacacatgtacaattttattactataccattttaataatttctttgacaatctacaactcttgaaatgaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38666523 |
gtgatgcacgacaagataaagtaaatgtttcacacatgtacaattttattactataccat----------------------tacaactcttgaaatgaa |
38666600 |
T |
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| Q |
304 |
atgaaatgaacataaagttaaatgtgggtaccgggaagcaagttgtaataaaaatcggtgtgttaacgt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666601 |
atgaaatgaacataaagttaaatgtgggtaccgggaagcaagttgtaataaaaatcggtgtgttaacgt |
38666669 |
T |
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