View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14869_low_1 (Length: 675)
Name: NF14869_low_1
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 595; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 1 - 660
Target Start/End: Complemental strand, 16150512 - 16149853
Alignment:
| Q |
1 |
gcaattactattgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattattccaaaaggagtg |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16150512 |
gcaattactattgaaaacgattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaaggagtg |
16150413 |
T |
|
| Q |
101 |
ggttctcaattagaaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccgtggaggatttcctgatnnnnnnnttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
16150412 |
ggttctcaattagaaaaggtaggtttgttaataaaaatgggataatgcacaggagagatttgttttgtcaccgcggaggatttcctgataaaaaaattca |
16150313 |
T |
|
| Q |
201 |
agatccgtctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16150312 |
agatccgtctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatccttcgagatttttccagaa |
16150213 |
T |
|
| Q |
301 |
gagtggcaggttattgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaag |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16150212 |
gagtggcaggtttttgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaag |
16150113 |
T |
|
| Q |
401 |
aagagaagcggatattgctattaaaagaagccgatctttcagtcaagcaaataatgcgtgttattgagcttgagaaaaatgtaaaacgtggagatcttcg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
16150112 |
aagagaagcggatattgctattaaaagaagccgatctttcagtcaagcaaataatgcgtgttatggagcttgagaaaaatgtaaaacatggagatcttcg |
16150013 |
T |
|
| Q |
501 |
atttcttgagaaagatattcataatttctttaataagattcatcaaaataacatgaatggtgatgctaatgatcttttacaactttgtaagttttccaag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
16150012 |
atttcttgagaaagatattcataatttctttaataagattcatcaagataacatgaatggtgatgctaatgatcttttacaactttgtaagttatccaag |
16149913 |
T |
|
| Q |
601 |
gaagaaaactcatgcttcaaatttgaatttacggttgataaagaaaaaagactagaaaat |
660 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16149912 |
gaagaaaactcatgcttccaatttgaatttacggttgataaagaaaaaagactagaaaat |
16149853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 3669775 - 3669618
Alignment:
| Q |
21 |
ttttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattattccaaaaggagtgggttctcaattagaaaaggt |
120 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |||| ||||||||| || ||||||| ||||| ||||||| | |||||||||| || |||||| |
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|
| T |
3669775 |
ttttgaaccttttattggtcagtgttttctaaatgagaaagaagcttccagattttat-----atattctaaaagga-tcggttctcaatcagtaaaggt |
3669682 |
T |
|
| Q |
121 |
aggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccgtggaggatttc |
184 |
Q |
| |
|
|| |||| ||||||||||| || ||||||| | ||| ||||||||| ||| |||||||| |
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|
| T |
3669681 |
caattaattaagaaaaatgggatgatacataggaaatattgtttttgtcacggtgaaggatttc |
3669618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 22141656 - 22141602
Alignment:
| Q |
24 |
tgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttat |
78 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||| ||||||||| |||||||||| |
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|
| T |
22141656 |
tgaaccttttattggtcagtgttttctaaatgagaaagaagcttccaaattttat |
22141602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 660
Target Start/End: Complemental strand, 4653104 - 4652453
Alignment:
| Q |
1 |
gcaattactattgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattattccaaaaggagtg |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
4653104 |
gcaattactattgaaaactatttcgaaccttttattggacaatattttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaatgagtg |
4653005 |
T |
|
| Q |
101 |
ggttctcaattagaaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccgtggaggatttcctgatnnnnnnnttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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|
| T |
4653004 |
ggttctcaattagaaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccgtggaggattttctgataaaaaaaatca |
4652905 |
T |
|
| Q |
201 |
agatccgtctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652904 |
tgatccgtctaaagaacaacgaaatagacaatctt--------ggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaa |
4652813 |
T |
|
| Q |
301 |
gagtggcaggttattgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaag |
400 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4652812 |
gagtggcaggatattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaag |
4652713 |
T |
|
| Q |
401 |
aagagaagcggatattgctattaaaagaagccgatctttcagtcaagcaaataatgcgtgttattgagcttgagaaaaatgtaaaacgtggagatcttcg |
500 |
Q |
| |
|
| | |||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |
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|
| T |
4652712 |
acgggaagcgaatattgctattaaaagaagctgatctttcggtcaaacaaataatgcgtgttatggagcttgagaaaaacgtaaaacatggagatcttcg |
4652613 |
T |
|
| Q |
501 |
atttcttgagaaagatattcataatttctttaataagattcatcaaaataacatgaatggtgatgctaatgatcttttacaactttgtaagttttccaag |
600 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4652612 |
atttcttcgaaaagatattcataatttctttaataagattcatcaagataacatgaatggtgatgttaatgatcttttacaactttgtaagttttccaag |
4652513 |
T |
|
| Q |
601 |
gaagaaaactcatgcttcaaatttgaatttacggttgataaagaaaaaagactagaaaat |
660 |
Q |
| |
|
|| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
4652512 |
gatgaaaactcatgcttccaatttgtatttactgttgataaagaaaaaagactagaaaat |
4652453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8925434 - 8925359
Alignment:
| Q |
1 |
gcaattactattgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaatttt |
76 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8925434 |
gcaattactattgaaaacgattttgaaccttttatagggcggtgttttctaagtgaggaagaagctttcaaatttt |
8925359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8935691 - 8935616
Alignment:
| Q |
1 |
gcaattactattgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaatttt |
76 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8935691 |
gcaattactattgaaaacgattttgaaccttttatagggcggtgttttctaagtgaggaagaagctttcaaatttt |
8935616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 23301799 - 23302271
Alignment:
| Q |
1 |
gcaattactattgaaaaccattttgaaccttttatagggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattattccaaaaggagtg |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23301799 |
gcaattactattgaaaacgattttgaaccttttatagggcaatgttttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaaggagtg |
23301898 |
T |
|
| Q |
101 |
ggttctcaattagaaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccgtggaggatttcctgatnnnnnnnttca |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
23301899 |
ggttctcaattaaaaaaggtaggtttgttaataaaaatgggataatgcaaaggagagatttgttttgtcaccgaggaggatttcctgataaaaaaattca |
23301998 |
T |
|
| Q |
201 |
agatccgtctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23301999 |
agatccgtctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatccttagagatttttccagaa |
23302098 |
T |
|
| Q |
301 |
gagtggcaggttattgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23302099 |
gagtggcaggttattgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaag |
23302198 |
T |
|
| Q |
401 |
aagagaagcggatattgctattaaaagaagccgatctttcagtcaagcaaataatgcgtgttattgagcttga |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23302199 |
aagagaagcggatattgctattaaaagaagcagatctttcagtcaagcaaataatgcgtgttatggagcttga |
23302271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 26926206 - 26926252
Alignment:
| Q |
21 |
ttttgaaccttttatagggcagtgttttctaagtgaggaagaagctt |
67 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
26926206 |
ttttgaaccttttattgggcaatgttttttaagtgaggaagaagctt |
26926252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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