View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14869_low_10 (Length: 370)
Name: NF14869_low_10
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_10 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 219 - 370
Target Start/End: Original strand, 40641276 - 40641422
Alignment:
| Q |
219 |
gctggatgtgatttccaggaccatattcatagcaagagaatttagaacctaggattgacctgaactttaggcacaaacttaaatattatcttctcctcga |
318 |
Q |
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| T |
40641276 |
gctggatatgatttccaggaccatattcatagcaagagaatttagaacctaggattga-----actttaggcacaaacttaaatattatcttctcctcga |
40641370 |
T |
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| Q |
319 |
gtgatatatattccacccaattcatgtaagtaaaatccatgtgcgtcagtaa |
370 |
Q |
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| T |
40641371 |
gtgatatatattccacccaattcatgtaagtaaaatccatgtgcgtcagtaa |
40641422 |
T |
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Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 40640510 - 40640652
Alignment:
| Q |
18 |
ttttgaaggcaaagtgaaaagttaatacatccaaaaatatattatttatgatgactatgaggtct---catctcctttt-ttaactccttagaaatatcg |
113 |
Q |
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| T |
40640510 |
ttttgaaggcaaagtgaaaagttaatacatccaaaaatatattatttatgatgactatgaggtttgatcatctcctttttttaactccttagaaatatcg |
40640609 |
T |
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| Q |
114 |
gatttaatcgtaaaatttccgttcactttgaggggccaggacc |
156 |
Q |
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| T |
40640610 |
gatttaatcgtaaaatttccgttcactttgaggggccaggacc |
40640652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 40641219 - 40641258
Alignment:
| Q |
148 |
gccaggaccacctatcttctactgccttgtgaaacgaagt |
187 |
Q |
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| T |
40641219 |
gccatgaccacctatcttctactgccttgtgaaacgaagt |
40641258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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