View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14869_low_11 (Length: 359)
Name: NF14869_low_11
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 172 - 341
Target Start/End: Complemental strand, 51169487 - 51169315
Alignment:
| Q |
172 |
ggttaatctaccttatgagcaccaaataattccccatctttaaaaacctt---ctttcaaatttacgtgaaagaaatgttatgctttattattttccaga |
268 |
Q |
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| T |
51169487 |
ggttaatctaccttatgagcaccaaataattccccatctttaaaaaccttattctttcaaatttacgtgaaagaaatgttatgctttattattttccaga |
51169388 |
T |
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| Q |
269 |
caaccaaaccaagaacaaagttgttgtttacatgtgcatgtcattgaactaattacggattattaaaaacatc |
341 |
Q |
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| T |
51169387 |
caaccaaaccaagaacaaagttgttgtttacatgtgcatgccattgaactaattacggattattaaaaacatc |
51169315 |
T |
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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 51169638 - 51169538
Alignment:
| Q |
1 |
atagatagaaaataagatattgaatagatgtgaaaaattaattcatatagttgaaaattttattaggcataataccaaatacctaattatttaaggttgt |
100 |
Q |
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| T |
51169638 |
atagatagaaaataaaatattgaatagatgtgaaaaattaattcatatagttgaaaattttatcaggcataataccaaatacctaattatttaaggttgt |
51169539 |
T |
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| Q |
101 |
c |
101 |
Q |
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| T |
51169538 |
c |
51169538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 341
Target Start/End: Complemental strand, 51153455 - 51153366
Alignment:
| Q |
250 |
tgctttattattttccagacaaccaaaccaagaacaaagttgttgtttacatgtgcatgtcattgaactaattacggattattaaaaacatc |
341 |
Q |
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| T |
51153455 |
tgctttattatattccggacaaacaacc--agaacaaagttgttgtctacatgtgcatataattgcactaattacggattattgaaaacatc |
51153366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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