View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14869_low_13 (Length: 343)
Name: NF14869_low_13
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 46462771 - 46463080
Alignment:
| Q |
15 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
114 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462771 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46462870 |
T |
|
| Q |
115 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462871 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46462970 |
T |
|
| Q |
215 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtattagatttctgttctatagggaatgaattaaaatctgtagatttt |
314 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462971 |
tgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttctgttctatagggaatgaattaaaatctgtagatttt |
46463070 |
T |
|
| Q |
315 |
tgttagaaac |
324 |
Q |
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|||||||||| |
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| T |
46463071 |
tgttagaaac |
46463080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 46451803 - 46452067
Alignment:
| Q |
15 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
114 |
Q |
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| T |
46451803 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46451902 |
T |
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| Q |
115 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451903 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46452002 |
T |
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| Q |
215 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtattagatttct |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46452003 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46452067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 46344753 - 46344489
Alignment:
| Q |
15 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
114 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344753 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46344654 |
T |
|
| Q |
115 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344653 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46344554 |
T |
|
| Q |
215 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtattagatttct |
279 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46344553 |
tgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46344489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 46466194 - 46466447
Alignment:
| Q |
16 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
115 |
Q |
| |
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|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
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| T |
46466194 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46466293 |
T |
|
| Q |
116 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
215 |
Q |
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|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
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| T |
46466294 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46466393 |
T |
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| Q |
216 |
gggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgta |
269 |
Q |
| |
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||||||||||||| ||||| ||||||| |||||||||||||| |||||||||| |
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| T |
46466394 |
gggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgta |
46466447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 46471399 - 46471652
Alignment:
| Q |
16 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
115 |
Q |
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|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
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| T |
46471399 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46471498 |
T |
|
| Q |
116 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
215 |
Q |
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|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
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| T |
46471499 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46471598 |
T |
|
| Q |
216 |
gggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgta |
269 |
Q |
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||||||||||||| ||||| ||||||| |||||||||||||| |||||||||| |
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| T |
46471599 |
gggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgta |
46471652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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