View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14869_low_14 (Length: 308)
Name: NF14869_low_14
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 293
Target Start/End: Original strand, 8259513 - 8259805
Alignment:
| Q |
2 |
tatatctacctgttgaataggataacaaaattaaccaacattacaaaacaattggtttgagctaacgattaacaaagttgaaggagttaaattaagatct |
101 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259513 |
tatatctacctgttgtataggataacaaaattaaccgacattagataacaattggtttgagctaacgattaacaaagttgaaggagttaaattaagatct |
8259612 |
T |
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| Q |
102 |
agacttaaactttgatgaagaaaaaatatcaacatatataacataaactaacatttcttatcaaaaaattattaatttagtgttcaattgattattttga |
201 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259613 |
agatttaaactttgatgaagaaaaaataccaacatatataacataaactaacatttcttatcaaaaaattattaatttagtgttcaattgattattttga |
8259712 |
T |
|
| Q |
202 |
agtcaagtcaagagagagtaataaataattagag-nnnnnnnngagagtaataaataggattacgaatattatgaacctgtccataagtatct |
293 |
Q |
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| T |
8259713 |
agtcaagtcaagagagagtaataaataattagagaaaaaaagagagagtaataaataggattacaaatattatgaacctgtccataagtatct |
8259805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 8257205 - 8257332
Alignment:
| Q |
2 |
tatatctacctgttgaataggataacaaaattaaccaacattacaaaacaattggtttgagctaacgattaacaaagttgaaggagttaaattaagatct |
101 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8257205 |
tatatctacctgttgcataggataacagaattaaccaacattacaaaacaattggtttgagctaacgattaacaaagttaaaggagttaaattaagatct |
8257304 |
T |
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| Q |
102 |
agacttaaactttgatgaagaaaaaata |
129 |
Q |
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| T |
8257305 |
agattcaaactctgatgaaggaaaaata |
8257332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 8257343 - 8257457
Alignment:
| Q |
178 |
ttagtgttcaattgattattttgaagtcaagtcaagagagagtaataaataattagagnnnnnnnn-----gagagtaataaataggattacgaatatta |
272 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
8257343 |
ttagtgttcaattgattattttgaagtcaag-----agagaataataaataattagagtaaaaaaaaaagagagagtaataaataagattacgaatatta |
8257437 |
T |
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| Q |
273 |
tgaacctgtccataagtatc |
292 |
Q |
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| T |
8257438 |
tcaacctgtccataagtatc |
8257457 |
T |
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