View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14869_low_15 (Length: 293)

Name: NF14869_low_15
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14869_low_15
NF14869_low_15
[»] chr7 (1 HSPs)
chr7 (1-293)||(40641431-40641723)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 40641431 - 40641723
Alignment:
Q  1 attcatgaatcgttgaattttccgtttgttagtggcatgtgataatgttgaattgcatttataattagatgaagtgacagcaaagttgataattactact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40641431 attcatgaatcgttgaattttccgtttgttagtggcatgtgataatgttgaattgcatttataattagatgaagtgacagcaaagttgataattactact 40641530  T
Q  101 agtagtacttgttgataataggtggtccatttctgtccatgcatcggtaattaagttactacattaagtttcgttcatttcatggaccactgaacggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40641531 agtagtacttgttgataataggtggtccatttctgtccatgcattggtaattaagttactacattaagtttcgttcatttcatggaccactgaacggaat 40641630  T
Q  201 atttttaccttttttattgacatgaacggaatacctgaaccttgacgaagttattttgaaacttgttattgatttactctatttcccattgat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40641631 atttttaccttttttattgacatgaacggaatacctgaaccttgacgaagttattttgaaacttgttattgatttactctatttcccattgat 40641723  T

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