View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14869_low_17 (Length: 264)
Name: NF14869_low_17
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 26985319 - 26985093
Alignment:
| Q |
23 |
tgtcataatcatttgctaatgaagtgtcataatcatatatatcagatgatttgatgaaattaaaaatataacgttgcttggtaaaatccaagaatcaaga |
122 |
Q |
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| T |
26985319 |
tgtcataatcatttgctaatgaagtgtcataatcatatatatcagatgatttgatgaaattaaaaatataacgttgcttggtaaaatccaagaatcaaaa |
26985220 |
T |
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| Q |
123 |
ttcaaaatttatacttagtaaactaaatatccaattctaatgtataattaataataaacgtagcaattaaaattat--gtgtataagctgattgaaggtt |
220 |
Q |
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| T |
26985219 |
ttcaaaatttatacttagtaaactaaatattcaattctaatgtataattaataataaacgta-aaattatgtgtataaggctataagctaattcaaggtt |
26985121 |
T |
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| Q |
221 |
ggttcaattagtaaagagtttgattcat |
248 |
Q |
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| T |
26985120 |
ggttcaatcggtaaagagtttgattcat |
26985093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 26983265 - 26983152
Alignment:
| Q |
23 |
tgtcataatcatttgctaatgaagtgtcataatcatatatatcagatgatttgatgaaattaaaaat--------ataacgttgcttggtaaaatccaag |
114 |
Q |
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| T |
26983265 |
tgtcatatgcatttgctaaaagagggtcataatcatatttattagatgatttgaggaaattaaaaatttgaaagaataacgttacttggtaaaatccaag |
26983166 |
T |
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| Q |
115 |
aatcaagattcaaa |
128 |
Q |
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| T |
26983165 |
aatcaagattcaaa |
26983152 |
T |
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