View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14869_low_2 (Length: 666)
Name: NF14869_low_2
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 42 - 591
Target Start/End: Complemental strand, 8775997 - 8775448
Alignment:
| Q |
42 |
cttctcctacatcctccctgccagtgttgtcgtcaaagttgacgtcaatatttgaaccactgtgattactagcacaatcaattccactatcatcgggatt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8775997 |
cttctcctacatcctccctgccagtgttgtcgtcaaagttgacgtcaatatttgaaccactgtgattactagcacaatcaattccactatcatcaggatt |
8775898 |
T |
|
| Q |
142 |
atatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttgttgccatttgaacctccactgtgattactagaacaatcagttaga |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8775897 |
atatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttgttgccatttgaacctccattgtgattactagaacaatcagttaga |
8775798 |
T |
|
| Q |
242 |
atatcaggatcatatgtagtcaaaaaggatcgataatcttcatccgtttcatcatcgtcttcactgatatatccactcaaaaatttcatataatcttcat |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
8775797 |
atatcaggatcatatgtagtcaaaaaggatcgataatcttcatccgtttcatcatcgtcttcactggtatatccactcaaaaatttcatataatcctcat |
8775698 |
T |
|
| Q |
342 |
ctgcatcatcatctatagtctgattatttttatcaattaaagcatccgtatttccataatcttcatccgtttcatcaacctcttcaccagtatatgtact |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8775697 |
ctgcatcatcatctatagtctgattatttttatcaattaaagcatccgtatttccataatcttcatccgtttcatcaacctcttcaccagtatatgtact |
8775598 |
T |
|
| Q |
442 |
caaaaattctgcataatcttcatcagcctcatcatctatagtatgatcgtttttatcaattaaagcagccgtatttccatgatcttcacccatttcatca |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8775597 |
caaaaattctgcataatcttcatcagcctcatcatctatagtatgatcgtttttatcaattaaagcagccgtatttccatgatcttcacccatttcatca |
8775498 |
T |
|
| Q |
542 |
tcatcttcaccggtatttgcactcaaattgtttacattatcttcatctgc |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8775497 |
tcatcttcaccggtatttgcactcaaattgttcacattatcttcatctgc |
8775448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 274 - 652
Target Start/End: Complemental strand, 8775642 - 8775261
Alignment:
| Q |
274 |
ataatcttcatccgtttcatcatcgtcttcactgatatatccactcaaaaatttcatataatcttcatctgcatcatcatctatagtctgattattttta |
373 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||||| ||||||||||| |||||||||||| || |||||||||||||| |||| |||||| |
|
|
| T |
8775642 |
ataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcatcatctatagtatgatcgttttta |
8775543 |
T |
|
| Q |
374 |
tcaattaaagcatccgtatttccataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcat |
473 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| || |||||||| | |||||||| |||| || ||||||| | ||| ||||||||| || ||| |
|
|
| T |
8775542 |
tcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaattgttcacattatcttcatctgctgcat |
8775443 |
T |
|
| Q |
474 |
ca---tctatagtatgatcgtttttatcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaatt |
570 |
Q |
| |
|
|| ||||| |||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8775442 |
cacactctatcacatgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatcttcaccggtatttgcactcaaatt |
8775343 |
T |
|
| Q |
571 |
gtttacattatcttcatctgcatcaagatctatcgtatggtcatttttagcatttaaagcagccatgttttcaccattcatc |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8775342 |
gtttacattatcttcatctgcatcaagatctatcgtatggtcatttttagcatttaaagcagccatattttcaccattcatc |
8775261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 397 - 634
Target Start/End: Complemental strand, 8775765 - 8775528
Alignment:
| Q |
397 |
ataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcatcatctatagtatgatcgttttta |
496 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||||| ||||||||||| |||||| ||||| || |||||||||||||| |||| |||||| |
|
|
| T |
8775765 |
ataatcttcatccgtttcatcatcgtcttcactggtatatccactcaaaaatttcatataatcctcatctgcatcatcatctatagtctgattattttta |
8775666 |
T |
|
| Q |
497 |
tcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaattgtttacattatcttcatctgcatcaa |
596 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| || |||||||| | |||||||| |||| || ||||||| | | ||| ||||||||| || ||| |
|
|
| T |
8775665 |
tcaattaaagcatccgtatttccataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcat |
8775566 |
T |
|
| Q |
597 |
gatctatcgtatggtcatttttagcatttaaagcagcc |
634 |
Q |
| |
|
|||||| ||||| || |||||| || ||||||||||| |
|
|
| T |
8775565 |
catctatagtatgatcgtttttatcaattaaagcagcc |
8775528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 2541659 - 2541830
Alignment:
| Q |
97 |
accactgtgattactagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttg |
196 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||| ||||| | | || || | ||| ||| |||||||| ||| ||||||||||| || ||||| |
|
|
| T |
2541659 |
accactatgattactagcacaatcagtttcactatcaa---gattacaagcagccagataggatgcataatctgcgtccatttcatcactgtcattgttg |
2541755 |
T |
|
| Q |
197 |
ttgccatttgaacctccactgtgattactagaacaatcagttagaatatcaggatcatatgtagtcaaaaaggat |
271 |
Q |
| |
|
|||||||||||||| | ||| |||||||| | |||| ||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
2541756 |
ttgccatttgaaccactactctgattacttgcacaaccagtttcaatatcaggatcatgtgtacacaaaaaggat |
2541830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 2542111 - 2542206
Alignment:
| Q |
111 |
tagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttgttgccatttgaac |
209 |
Q |
| |
|
||||||||||| || || |||||| ||||||| |||| |||||||| || |||||||||||| |||||||| || || |||||||||||||||||| |
|
|
| T |
2542111 |
tagcacaatcagtttcaatatcat---gattataagtagccaaaaaggatgtgtaatctgcatcgatttcatcaatgtcattgttgttgccatttgaac |
2542206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 2541986 - 2542073
Alignment:
| Q |
97 |
accactgtgattactagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactg |
187 |
Q |
| |
|
|||||| |||||||||||||||||| || || |||||| ||||||| |||| |||| ||| ||||||||||| |||| |||||||||| |
|
|
| T |
2541986 |
accactatgattactagcacaatcagtttcaatatcat---gattataagtagccaaataggatgcgtaatctgaatccacttcatcactg |
2542073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 2542213 - 2542271
Alignment:
| Q |
234 |
cagttagaatatcaggatcatatgtagtcaaaaaggatcgataatcttcatccgtttca |
292 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
2542213 |
cagtttgaatatcaggatcatgtgtaggcaaaaaggatccgcaatcttcatccatttca |
2542271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University