View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14869_low_20 (Length: 250)
Name: NF14869_low_20
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 53661382 - 53661160
Alignment:
| Q |
19 |
ggaagtatgtacgaccttcttcataaacagaaaactgtccttgctcttccatctttgctaaaagtagccattgatgtttctgaagggatgaaatatttgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661382 |
ggaagtatgtacgaccttcttcataaacagaaaactgtccttgctcttccatctttgctaaaagtagccattgatgtttctgaagggatgaaatatttgc |
53661283 |
T |
|
| Q |
119 |
atcagaatgatatcatacaccgggacctcaagtcagctaatcttttgatagataagactggagtaagctcacattgattacttttaaattttactggctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53661282 |
atcagaatgatatcatacaccgggacctcaagtcagctaatcttttgatagataagactggagtaagctcacattgattacttttaaattttactggctt |
53661183 |
T |
|
| Q |
219 |
attgtattttagttgatgatgtc |
241 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
53661182 |
attgtattttagttgatgctgtc |
53661160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 9207854 - 9207957
Alignment:
| Q |
64 |
cttccatctttgctaaaagtagccattgatgtttctgaagggatgaaatatttgcatcagaatgatatcatacaccgggacctcaagtcagctaatcttt |
163 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | || ||||| |||||||| || ||| |||| || ||| ||||||||||| | || |||||| |
|
|
| T |
9207854 |
cttccatctttactaaaagtagccattgatgtttccaagggaatgaactatttgcaccaaaataatattattcacagggacctcaagactgccaatcttc |
9207953 |
T |
|
| Q |
164 |
tgat |
167 |
Q |
| |
|
|||| |
|
|
| T |
9207954 |
tgat |
9207957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University