View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14869_low_3 (Length: 576)

Name: NF14869_low_3
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14869_low_3
NF14869_low_3
[»] chr4 (36 HSPs)
chr4 (20-565)||(48875804-48876349)
chr4 (20-565)||(48886186-48886731)
chr4 (20-565)||(48870500-48871045)
chr4 (368-502)||(45365859-45365993)
chr4 (233-345)||(48705169-48705281)
chr4 (381-502)||(7790381-7790502)
chr4 (381-522)||(7771696-7771837)
chr4 (379-485)||(7773481-7773587)
chr4 (383-565)||(48734987-48735169)
chr4 (377-502)||(45384531-45384662)
chr4 (384-486)||(7237398-7237500)
chr4 (379-486)||(7765941-7766048)
chr4 (379-468)||(7786763-7786852)
chr4 (382-486)||(48147368-48147472)
chr4 (382-486)||(48156084-48156188)
chr4 (377-486)||(48903255-48903361)
chr4 (379-421)||(7878045-7878087)
chr4 (59-179)||(48735352-48735466)
chr4 (59-107)||(48898701-48898749)
chr4 (435-522)||(7878738-7878825)
chr4 (377-487)||(48899037-48899147)
chr4 (59-104)||(48147756-48147801)
chr4 (247-340)||(48735194-48735287)
chr4 (379-499)||(37826632-37826752)
chr4 (382-486)||(48864337-48864441)
chr4 (435-522)||(7908657-7908744)
chr4 (435-486)||(45371729-45371780)
chr4 (435-502)||(48853036-48853103)
chr4 (242-324)||(45371876-45371958)
chr4 (377-411)||(50669382-50669416)
chr4 (360-413)||(43596153-43596206)
chr4 (59-104)||(48156460-48156505)
chr4 (59-104)||(48170601-48170646)
chr4 (126-179)||(48705329-48705382)
chr4 (440-501)||(49038518-49038579)
chr4 (439-499)||(49043810-49043870)
[»] chr5 (4 HSPs)
chr5 (386-472)||(179364-179450)
chr5 (384-485)||(9120067-9120168)
chr5 (436-494)||(29688485-29688543)
chr5 (386-499)||(29712083-29712196)
[»] chr3 (6 HSPs)
chr3 (377-502)||(47451539-47451664)
chr3 (377-422)||(11024216-11024261)
chr3 (377-484)||(11015148-11015249)
chr3 (377-486)||(11005583-11005686)
chr3 (57-102)||(11015557-11015602)
chr3 (138-182)||(11005890-11005934)
[»] chr8 (6 HSPs)
chr8 (377-503)||(15349180-15349306)
chr8 (379-469)||(4962191-4962281)
chr8 (379-469)||(12195623-12195713)
chr8 (379-469)||(12440051-12440141)
chr8 (379-486)||(12200641-12200748)
chr8 (379-486)||(12445069-12445176)
[»] chr6 (1 HSPs)
chr6 (242-306)||(21015998-21016062)


Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 565
Target Start/End: Original strand, 48875804 - 48876349
Alignment:
Q  20 cctttttggtcagaagtagatgatgacgatgaaaagatgtatggttttgggtatgatcaattagcagatgattacttggtggttttatcattctcccctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48875804 cctttttggtcagaagtagatgatgacgatgaaaagatgtatggttttgggtatgatcagttagcagatgattacttggtggttttatcattctcccctt 48875903  T
Q  120 atatggcatcacgctttgagtttttctcattgagagccaatacctggatacaaattgagtgtcctcactccccttttagtaatgcctttgatgagaagtg 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48875904 atatggcatcacgcttcgagtttttctcattgagagccaatacctggatacaaattgagtgtcctcactccccttttagtaatgcctttgatgagaagtg 48876003  T
Q  220 cggtgtaggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || |||||||||    
T  48876004 cggtgtaggttccctctatcacggggctattcattggttggcttatcgtgatgatttacaaaagaatgttatccttgcctttgatttcactgaaaggcaa 48876103  T
Q  320 ctttttgatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggcta 419  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  48876104 ctttttgatatgcatttgccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgcta 48876203  T
Q  420 tggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttc 519  Q
    |||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||    
T  48876204 tggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttc 48876303  T
Q  520 tgacgagtccttttccccattgtgctgtacaaaaaatggtgatatt 565  Q
     || ||||||||||||||||||||||||||||||| ||||||||||    
T  48876304 cgatgagtccttttccccattgtgctgtacaaaaagtggtgatatt 48876349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 565
Target Start/End: Original strand, 48886186 - 48886731
Alignment:
Q  20 cctttttggtcagaagtagatgatgacgatgaaaagatgtatggttttgggtatgatcaattagcagatgattacttggtggttttatcattctcccctt 119  Q
    |||| ||||| ||||| ||||||||| ||||||| | | |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||    
T  48886186 ccttcttggttagaagaagatgatgatgatgaaaggttatatggttttgggtatgatcagttaacagatgattacttagtggttttatcattcttccctt 48886285  T
Q  120 atatggcatcacgctttgagtttttctcattgagagccaatacctggatacaaattgagtgtcctcactccccttttagtaatgcctttgatgagaagtg 219  Q
    ||||  |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||   |||| | ||||||| |||      
T  48886286 atatttcatcacacttcgagtttttctcattgagagccaatacctggatacaaattgagtgtactgacagcccttttgcgaatggcattgatgataagcc 48886385  T
Q  220 cggtgtaggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaa 319  Q
    | | ||||||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||| ||||||||||||||||||||||||||||||||||    
T  48886386 cagcgtaggttccctctataatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgatttaacggaaaggcaa 48886485  T
Q  320 ctttttgatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggcta 419  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  48886486 ctttttgatatgcttttaccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgcta 48886585  T
Q  420 tggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttc 519  Q
    |||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||    
T  48886586 tggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttc 48886685  T
Q  520 tgacgagtccttttccccattgtgctgtacaaaaaatggtgatatt 565  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  48886686 tgatgagtccttttccccattgtgctgtacaaaaagtggtgatatt 48886731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 565
Target Start/End: Original strand, 48870500 - 48871045
Alignment:
Q  20 cctttttggtcagaagtagatgatgacgatgaaaagatgtatggttttgggtatgatcaattagcagatgattacttggtggttttatcattctcccctt 119  Q
    |||| ||||| ||||| ||||||||| ||||||| | | |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||    
T  48870500 ccttcttggttagaagaagatgatgatgatgaaaggttatatggttttgggtatgatcagttaacagatgattacttagtggttttatcattcttccctt 48870599  T
Q  120 atatggcatcacgctttgagtttttctcattgagagccaatacctggatacaaattgagtgtcctcactccccttttagtaatgcctttgatgagaagtg 219  Q
    ||||  |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||   |||| | ||||||| |||      
T  48870600 atatttcatcacacttcgagtttttctcattgagagccaatacctggatacaaattgagtgtactgacagcccttttgcgaatggcattgatgataagcc 48870699  T
Q  220 cggtgtaggttccctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaa 319  Q
    | | ||||||||||||||| | |||||||||||||||||||||||| ||| || ||||  ||||| ||||||||||||||||||||||||||||||||||    
T  48870700 cagcgtaggttccctctataatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgatttaacggaaaggcaa 48870799  T
Q  320 ctttttgatatgcatttgccagatgattattataattataactatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggcta 419  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||    
T  48870800 ctttttgatatgcttttaccagatgattattacaattataactatgatcctaacaactgtggtttgtgggtatttggggaatttctcagtctatatgcta 48870899  T
Q  420 tggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttc 519  Q
    |||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||    
T  48870900 tggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttc 48870999  T
Q  520 tgacgagtccttttccccattgtgctgtacaaaaaatggtgatatt 565  Q
     || ||||||||||||||||||||||||||||||| ||||||||||    
T  48871000 cgatgagtccttttccccattgtgctgtacaaaaagtggtgatatt 48871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 368 - 502
Target Start/End: Complemental strand, 45365993 - 45365859
Alignment:
Q  368 cctcacaactgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaataca 467  Q
    |||||| | |||||||||||||||||||| |||||| ||||| | ||||||||||||||| || || |||||||||||||||||||||||||  |||| |    
T  45365993 cctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatata 45365894  T
Q  468 aagtgaactcgtcttggacaaatactcatgttctt 502  Q
    |||||   |||||||||||||| ||||| ||||||    
T  45365893 aagtgcgttcgtcttggacaaagactcacgttctt 45365859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 233 - 345
Target Start/End: Complemental strand, 48705281 - 48705169
Alignment:
Q  233 ctctatcacggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttttgatatgc 332  Q
    |||||| | |||||||||||||||||||||||| || ||||||||| ||||  ||||||  ||||||||||||||| ||||||| |||||||||||||||    
T  48705281 ctctataatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttttgatatgc 48705182  T
Q  333 atttgccagatga 345  Q
     ||||||||||||    
T  48705181 ttttgccagatga 48705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 381 - 502
Target Start/End: Original strand, 7790381 - 7790502
Alignment:
Q  381 gtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtc 480  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||| || || ||||| |||||||||||||||||||  ||||||||||| | |||||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  481 ttggacaaatactcatgttctt 502  Q
    |||||| || |||| |||||||    
T  7790481 ttggactaaaactcttgttctt 7790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 381 - 522
Target Start/End: Original strand, 7771696 - 7771837
Alignment:
Q  381 gtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtc 480  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||| || || ||||| ||| |||||||||||||||  ||||||||||| | |||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  481 ttggacaaatactcatgttcttaccgttgatgacatttctga 522  Q
     ||||| || |||| ||||||| | ||||||| |||| ||||    
T  7771796 atggactaaaactcttgttctttctgttgatgccattcctga 7771837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 379 - 485
Target Start/End: Complemental strand, 7773587 - 7773481
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 478  Q
    |||||||||||||||||| |||| ||| ||| ||||||||| |||| ||  | || |||||||||||||||||||||||||  ||||||||||| | |||    
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 7773488  T
Q  479 tcttgga 485  Q
    |||||||    
T  7773487 tcttgga 7773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 383 - 565
Target Start/End: Complemental strand, 48735169 - 48734987
Alignment:
Q  383 ttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtctt 482  Q
    |||||||||||||| |||||||||||| | | | ||||| ||| || | |||||||||||   ||||||  ||||||  ||||||||||||| |||||||    
T  48735169 ttgtgggtatttggagaatttctcagtttttcgactatgaattttagtaataatacagttatgatatggacgatgaaagaatacaaagtgaattcgtctt 48735070  T
Q  483 ggacaaatactcatgttcttaccgttgatgacatttctgacgagtccttttccccattgtgctgtacaaaaaatggtgatatt 565  Q
    |||| || ||||||| | |  | ||||||| || | |  |||||  |||||||||||| || |||||||||||||||||||||    
T  48735069 ggactaaaactcatgctgtgtctgttgatggcactcccaacgagagcttttccccattttgttgtacaaaaaatggtgatatt 48734987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 377 - 502
Target Start/End: Complemental strand, 45384662 - 45384531
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataata------cagttgaaatatgggtgatgaacaaatacaaag 470  Q
    |||||||||||||||||||| |||||||||||| | || |||||| ||||| || ||| ||      ||||||||||||||||||||||  |||| ||||    
T  45384662 tgtggtttgtgggtatttggagaatttctcagtttttgagctatgcattatgataatattaatatttcagttgaaatatgggtgatgaaagaatataaag 45384563  T
Q  471 tgaactcgtcttggacaaatactcatgttctt 502  Q
    || | |||||||||||||| |||| |||||||    
T  45384562 tgcattcgtcttggacaaagactcgtgttctt 45384531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 486
Target Start/End: Complemental strand, 7237500 - 7237398
Alignment:
Q  384 tgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttg 483  Q
    ||||||||||||| |||||||||||||||||||||  ||||||| || || ||||| ||| |||||||||||||||  |||||||| || | |||| |||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  484 gac 486  Q
    |||    
T  7237400 gac 7237398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 486
Target Start/End: Original strand, 7765941 - 7766048
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 478  Q
    |||||||||||||| ||| |||||||||||| |||||| || ||||  || | || ||||| |||||||||||||||||||  ||||||||||| | |||    
T  7765941 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 7766040  T
Q  479 tcttggac 486  Q
    || |||||    
T  7766041 tcatggac 7766048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 468
Target Start/End: Original strand, 7786763 - 7786852
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaa 468  Q
    |||||||||||||| |||||||||||||||| |||||| || ||||  || | || ||||| |||||||||||||||||||  |||||||    
T  7786763 tggtttgtgggtatctggggaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaa 7786852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 486
Target Start/End: Complemental strand, 48147472 - 48147368
Alignment:
Q  382 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 481  Q
    |||||||||||||||  ||||||||||||||  || ||||||| || |  |||  | |||||||||||||||||||||  ||||||||||| | ||||||    
T  48147472 tttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 48147373  T
Q  482 tggac 486  Q
    |||||    
T  48147372 tggac 48147368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 486
Target Start/End: Complemental strand, 48156188 - 48156084
Alignment:
Q  382 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 481  Q
    ||||||||||||||| |||||||||||| |||||||| | ||||    | || | | |||||||||||||||||||||| ||||||||||| | || |||    
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttct 48156089  T
Q  482 tggac 486  Q
    |||||    
T  48156088 tggac 48156084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 486
Target Start/End: Original strand, 48903255 - 48903361
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 476  Q
    |||| ||| ||||||||||| |||||||| || ||||||||| |||||||    ||||||| | |||||||||||||||||||  ||||||||||| | |    
T  48903255 tgtgatttatgggtatttggagaatttcttagcctatgggctttggattac---gataataaatttgaaatatgggtgatgaaagaatacaaagtgcatt 48903351  T
Q  477 cgtcttggac 486  Q
     |||||||||    
T  48903352 tgtcttggac 48903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 7878045 - 7878087
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatg 421  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  7878045 tggtttgtgggtatttggagaatttctcagtctatgggctatg 7878087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 48735466 - 48735352
Alignment:
Q  59 tatggttttgggtatgatcaattagcagatgattacttggtggttttatcattctccccttatatggcatcacgctttgagtttttctcattgagagcca 158  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||   || |||||    ||    ||| || |||||||||||||||||||||||| |    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggttt---caatctccgtccatc---cattacactttgagtttttctcattgagagcta 48735373  T
Q  159 atacctggatacaaattgagt 179  Q
    ||||||||| | |||||||||    
T  48735372 atacctggaaagaaattgagt 48735352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 48898701 - 48898749
Alignment:
Q  59 tatggttttgggtatgatcaattagcagatgattacttggtggttttat 107  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  48898701 tatggttttgggtatgatcagttaacagatgattacttagtggttttat 48898749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 522
Target Start/End: Original strand, 7878738 - 7878825
Alignment:
Q  435 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctga 522  Q
    |||||||||||||||||||||||||  ||||||||||| | || |||||||  || |||| ||||||| | ||||||| |||| ||||    
T  7878738 atacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttcggttgatgtcattcctga 7878825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 487
Target Start/End: Original strand, 48899037 - 48899147
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 476  Q
    |||||||||||||| ||||| || ||| ||||| ||||||||    |||||  | || |||||||||||||||||||||||||  |||| ||||| || |    
T  48899037 tgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatataaagtaaaat 48899136  T
Q  477 cgtcttggaca 487  Q
    | |||||||||    
T  48899137 cctcttggaca 48899147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 48147801 - 48147756
Alignment:
Q  59 tatggttttgggtatgatcaattagcagatgattacttggtggttt 104  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggttt 48147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 48735287 - 48735194
Alignment:
Q  247 tattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttttgatatgcatttgcca 340  Q
    |||||||||||||||||||  | |||||||||  ||| |||||||   || ||||||||||| | ||||| |||||||| ||||| ||||||||    
T  48735287 tattcattggttggcttatcatcatgatttacgtaagggtgttattgctgtctttgatttaatgtaaaggaaacttttttatatggatttgcca 48735194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 499
Target Start/End: Complemental strand, 37826752 - 37826632
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 478  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||    | || || ||||| || || || ||||||||||  |||||||| || | |||    
T  37826752 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcg 37826653  T
Q  479 tcttggacaaatactcatgtt 499  Q
    |||||||| || |||| ||||    
T  37826652 tcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 486
Target Start/End: Original strand, 48864337 - 48864441
Alignment:
Q  382 tttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtct 481  Q
    ||||||||| ||||| || ||| ||||||||||| ||| || |    |||||| ||  ||||||||||||||||||||  ||||||||||| | ||||||    
T  48864337 tttgtgggtctttggagagtttatcagtctatggtctaggggtggatatgatactatcgttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 48864436  T
Q  482 tggac 486  Q
    |||||    
T  48864437 tggac 48864441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 522
Target Start/End: Original strand, 7908657 - 7908744
Alignment:
Q  435 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttcttaccgttgatgacatttctga 522  Q
    ||||| |||||||||||||||||||  ||||||||||| | || |||||||  || |||| ||||||| | ||||||| |||| ||||    
T  7908657 atacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccattcctga 7908744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 486
Target Start/End: Complemental strand, 45371780 - 45371729
Alignment:
Q  435 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggac 486  Q
    ||||||||||||||||||| |||||  ||||||||||| | |||||||||||    
T  45371780 atacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggac 45371729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 48853036 - 48853103
Alignment:
Q  435 atacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttctt 502  Q
    ||||||||||||||||||| |||||  |||||||||||   ||||||||||| || |||| |||||||    
T  48853036 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 48853103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 45371958 - 45371876
Alignment:
Q  242 ggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgatttaacggaaaggcaactttt 324  Q
    ||||||||| |||||||| ||| | || ||||||||   | ||||||||| |||||||||||||||| |||| || |||||||    
T  45371958 ggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaactttt 45371876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 411
Target Start/End: Original strand, 50669382 - 50669416
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtct 411  Q
    |||||||||||||||||||| ||||||||||||||    
T  50669382 tgtggtttgtgggtatttggagaatttctcagtct 50669416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 413
Target Start/End: Complemental strand, 43596206 - 43596153
Alignment:
Q  360 actatgatcctcacaactgtggtttgtgggtatttggggaatttctcagtctat 413  Q
    ||||||||||| | || |||| | |||||||||||||||||||||| |||||||    
T  43596206 actatgatcctaaaaattgtgatatgtgggtatttggggaatttcttagtctat 43596153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 48156505 - 48156460
Alignment:
Q  59 tatggttttgggtatgatcaattagcagatgattacttggtggttt 104  Q
    ||||| ||||||||||||||||||  ||||||||||||||| ||||    
T  48156505 tatggatttgggtatgatcaattaagagatgattacttggtagttt 48156460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 48170646 - 48170601
Alignment:
Q  59 tatggttttgggtatgatcaattagcagatgattacttggtggttt 104  Q
    |||||||||||||||||||| |||  |||||||||||| |||||||    
T  48170646 tatggttttgggtatgatcagttaagagatgattacttagtggttt 48170601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 48705382 - 48705329
Alignment:
Q  126 catcacgctttgagtttttctcattgagagccaatacctggatacaaattgagt 179  Q
    |||||| |||||||||||||||||||||||  ||||| |||| | |||||||||    
T  48705382 catcacactttgagtttttctcattgagagttaatacatggaaagaaattgagt 48705329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 501
Target Start/End: Complemental strand, 49038579 - 49038518
Alignment:
Q  440 gttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgttct 501  Q
    ||||||||||||||||||||  ||||||||||  | ||||||||||| || |||| ||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 49043870 - 49043810
Alignment:
Q  439 agttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactcatgtt 499  Q
    |||||||||||||||||||||  ||||||||||| | ||||| ||||| || |||| ||||    
T  49043870 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 386 - 472
Target Start/End: Original strand, 179364 - 179450
Alignment:
Q  386 tgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtg 472  Q
    |||||||||||  ||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||  |||||||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtg 179450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 384 - 485
Target Start/End: Original strand, 9120067 - 9120168
Alignment:
Q  384 tgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttg 483  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |  | || |||||||||||||||||||||||||  ||||||||||| | || |||||    
T  9120067 tgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttg 9120166  T
Q  484 ga 485  Q
    ||    
T  9120167 ga 9120168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 494
Target Start/End: Original strand, 29688485 - 29688543
Alignment:
Q  436 tacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttggacaaatactc 494  Q
    |||||||||||||||||||||||| |||||||| ||| | |||||||||||||| ||||    
T  29688485 tacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactc 29688543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 499
Target Start/End: Complemental strand, 29712196 - 29712083
Alignment:
Q  386 tgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcgtcttgga 485  Q
    ||||||||| | | || |||||||||||||| |||||   || || ||  |||||||||||||||||||||| | |||||||| ||||  || |||||||    
T  29712196 tgggtatttagaggatgtctcagtctatgggatatggcacatgataatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttgga 29712097  T
Q  486 caaatactcatgtt 499  Q
    | || |||| ||||    
T  29712096 ctaagactcttgtt 29712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 502
Target Start/End: Complemental strand, 47451664 - 47451539
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 476  Q
    |||||||||||||||||||| |||||||| |||||| ||| | |||||| | || || ||| |||||||||||||||||||||  |||||||||| || |    
T  47451664 tgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaatt 47451565  T
Q  477 cgtcttggacaaatactcatgttctt 502  Q
    ||||||||  ||| |||| |||||||    
T  47451564 cgtcttgggaaaagactcttgttctt 47451539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 11024261 - 11024216
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtctatgggctatgg 422  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  11024261 tgtgatttgtggatatttggagaatttctcagtctatgggctatgg 11024216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 484
Target Start/End: Complemental strand, 11015249 - 11015148
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 476  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||||      | |||   ||||||||||||||||| |||||  ||||||||||| | |    
T  11015249 tgtgatttgtggatatttggagaatttctaagtctatgggctatgg------aggatggaacagttgaaatatgggttatgaaagaatacaaagtgcatt 11015156  T
Q  477 cgtcttgg 484  Q
    ||||||||    
T  11015155 cgtcttgg 11015148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 486
Target Start/End: Complemental strand, 11005686 - 11005583
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 476  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||||        ||| | ||| ||||||||||||| |||||  ||||||||||| | |    
T  11005686 tgtgatttgtggatatttggagaatttcttagtctatgggctatgg------gggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcatt 11005593  T
Q  477 cgtcttggac 486  Q
    ||||||||||    
T  11005592 cgtcttggac 11005583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 11015602 - 11015557
Alignment:
Q  57 tgtatggttttgggtatgatcaattagcagatgattacttggtggt 102  Q
    ||||||||||||||||||| || |||  ||||||||||||||||||    
T  11015602 tgtatggttttgggtatgaccatttaagagatgattacttggtggt 11015557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 11005934 - 11005890
Alignment:
Q  138 agtttttctcattgagagccaatacctggatacaaattgagtgtc 182  Q
    ||||||||||||||||||| ||||| |||| | ||||||||||||    
T  11005934 agtttttctcattgagagcgaatacatggaaagaaattgagtgtc 11005890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 503
Target Start/End: Original strand, 15349180 - 15349306
Alignment:
Q  377 tgtggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaact 476  Q
    |||||||||||||| ||||| |||||| | ||||| ||| ||| |||||||  | || |||   |||||||||||||||||||  |||||||||||||||    
T  15349180 tgtggtttgtgggtctttggcgaattttttagtctttggtctacggattatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaact 15349279  T
Q  477 cgtcttggacaaatactcatgttctta 503  Q
    | ||||||||||| | || ||||||||    
T  15349280 cttcttggacaaagattcttgttctta 15349306  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 469
Target Start/End: Complemental strand, 4962281 - 4962191
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 469  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||||    ||  || |||||||||||||||||||||  ||||||||    
T  4962281 tggtttgtgggtatttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaa 4962191  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 12195623 - 12195713
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 469  Q
    ||||||||||||||||||  |||||||||||||||||  |||| ||| | || ||   |||||||||||||||| ||||||  ||||||||    
T  12195623 tggtttgtgggtatttggaaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaa 12195713  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 12440051 - 12440141
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaa 469  Q
    ||||||||||||||||||  |||||||||||||||||  |||| ||| | || ||   |||||||||||||||| ||||||  ||||||||    
T  12440051 tggtttgtgggtatttggaaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaa 12440141  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 486
Target Start/End: Original strand, 12200641 - 12200748
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 478  Q
    |||||||||||||||||| |||||||| |||||||||  |||| ||| | || || | ||  |||||||||||| |||||| | ||||||| ||   |||    
T  12200641 tggtttgtgggtatttggagaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcg 12200740  T
Q  479 tcttggac 486  Q
    ||||||||    
T  12200741 tcttggac 12200748  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 486
Target Start/End: Original strand, 12445069 - 12445176
Alignment:
Q  379 tggtttgtgggtatttggggaatttctcagtctatgggctatggattataatgataatacagttgaaatatgggtgatgaacaaatacaaagtgaactcg 478  Q
    |||||||||||||||||| |||||||| |||||||||  |||| ||| | || || | ||  |||||||||||| |||||| | ||||||| ||   |||    
T  12445069 tggtttgtgggtatttggagaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcg 12445168  T
Q  479 tcttggac 486  Q
    ||||||||    
T  12445169 tcttggac 12445176  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 21015998 - 21016062
Alignment:
Q  242 ggggctattcattggttggcttatggtgatgatttacaaaagagtgttatccttgcctttgattt 306  Q
    |||||||||||||||||||||| | || ||||||||  || ||  |||||| |||||||||||||    
T  21015998 ggggctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 21016062  T

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