View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14869_low_4 (Length: 562)
Name: NF14869_low_4
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 121 - 303
Target Start/End: Complemental strand, 26200452 - 26200269
Alignment:
| Q |
121 |
cgttcccaaaacgagaggtaataaagattgattgttgcatttcagcttttctgtccttgtactgataataataactccattgtgtagaacatggattctg |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26200452 |
cgttcccaaaaagagaggtaataaagattgattgttgcatttcaccttttctgtccttgtactgataataataactccattgtgtagaacatggattctg |
26200353 |
T |
|
| Q |
221 |
attcattttatgctggatgctgctgatttcagaaa-ggagaagattctctgtaccaatagcgaggtaatcattgaatcatattt |
303 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
26200352 |
attcaatttatgctgcctgctgctgatttcagaaacgggaaacattctctgtaccaatagcgaggtaatcattcaatcttattt |
26200269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 26168223 - 26168119
Alignment:
| Q |
251 |
agaaaggagaagattctctgt--accaatagcgaggtaatcattgaatcatattttataataagaattattttttcgtgaaaagaaaaattaaacatgtt |
348 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| || ||||||||||| |
|
|
| T |
26168223 |
agaaagggaaagattctctgtgtaccagtagcgaggtaatcattcaatcatattttataataagaattattttttcataaaaag--aagttaaacatgtt |
26168126 |
T |
|
| Q |
349 |
tttaatc |
355 |
Q |
| |
|
||||||| |
|
|
| T |
26168125 |
tttaatc |
26168119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 26123740 - 26123592
Alignment:
| Q |
203 |
tgtagaacatggattctgattcattttatgctggatgctgctgatttcagaaaggagaagattctctgt--accaatagcgaggtaatcattgaatcata |
300 |
Q |
| |
|
||||||||||||||||||||||| | ||||| || |||||| || ||||||| |||||||||||| |||| |||||||||||||||| |||| || |
|
|
| T |
26123740 |
tgtagaacatggattctgattcaactactgctg-at--tgctgaattgagaaagggaaagattctctgtgtaccagtagcgaggtaatcattcaatcgta |
26123644 |
T |
|
| Q |
301 |
ttttataataagaattattttttcgtgaaaagaaaaattaaacatgtttttaatc |
355 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||||||||||||||||| |
|
|
| T |
26123643 |
ttttataataagaattattttttc---ataaaaaaagttaaacatgtttttaatc |
26123592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 422
Target Start/End: Complemental strand, 26165787 - 26165722
Alignment:
| Q |
357 |
ataaaactcatcttctagcttcacctatctcgctgtgatcttgaccgattcaacaacatcaatttt |
422 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| ||| ||| |||||| ||||||||||||||| |
|
|
| T |
26165787 |
ataaaactcatcttctaccttcaccaatctcgctgcgattttggccgattgaacaacatcaatttt |
26165722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 118
Target Start/End: Complemental strand, 26123908 - 26123877
Alignment:
| Q |
87 |
attgtttctatcgatcagtcttctgtttgcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26123908 |
attgtttctatcgatcagtcttctgtttgcaa |
26123877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 118
Target Start/End: Complemental strand, 26168425 - 26168394
Alignment:
| Q |
87 |
attgtttctatcgatcagtcttctgtttgcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26168425 |
attgtttctatcgatcagtcttctgtttgcaa |
26168394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University