View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14869_low_5 (Length: 507)
Name: NF14869_low_5
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 39738501 - 39738975
Alignment:
| Q |
17 |
gttttacacttccaagttttcagctaatttctcttttcatttacaattacgattcaaatagagaattgacagattttatcagttgaatcaacacatttct |
116 |
Q |
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| T |
39738501 |
gttttacacttccaagttttcagctaatttctcttttcatttacaattacgattcaaatagagaattgacagattttctcagttgaatcaacacatttct |
39738600 |
T |
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| Q |
117 |
cgaatcaacgcatgatgttcatttttctatttcagtagacatatatacaatataatattttggttttggttgacccgatatatatagctggctctatctt |
216 |
Q |
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| T |
39738601 |
cgaatcaacgcatgatggtcatttttctatttcagtagacatatatacaatataatattttggtttcggttgacccgatatatatagctggctctatctt |
39738700 |
T |
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| Q |
217 |
gtgcttgaagtgannnnnnnnnnnnnnnnctgtagttgttatgttaggtcctatcctatgtgtatgtatctgcagtgatcccttttgatgttannnnnnn |
316 |
Q |
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| T |
39738701 |
gtgcttgaagtgattttttattttattttctgtagttgttatgttaggtcctatcctatgtgtatttatctgcagtgatcccttttgatgttattttt-- |
39738798 |
T |
|
| Q |
317 |
nctcccactctgatcagtcgtgcactgattttcctaaatgggaacaatgtgtgtggactatttctccaagtatttggatgttgcagattcagatagtttg |
416 |
Q |
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| T |
39738799 |
--tttcactctgatcagtcgtgcactgattttcctaaatgggaacaatgtgtgtggactatttctccaagtatttggatgttgcagattcagatagttta |
39738896 |
T |
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| Q |
417 |
ccctatggtgagtagatatgcacagtttaatttgacagtagttgatcaattccataataactgtgagaaaaggtagcct |
495 |
Q |
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| T |
39738897 |
ccctatggtgagtagatatgcacagtttaatttgacagtagttgatcaattccataataactgtgagaaaaggtagcct |
39738975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 476
Target Start/End: Complemental strand, 39868004 - 39867872
Alignment:
| Q |
345 |
ttttcctaaatgggaacaatgtgtgtggactatttctccaagtatttggatgttgcagattcagatagtttgccctatggt--gagtagatatgcacagt |
442 |
Q |
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|||||| ||| ||||||||||||| |||| |||| |||| ||||||||||||| |||||||| || ||||||| ||||| |||||| |||||||||| |
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| T |
39868004 |
ttttcccaaaagggaacaatgtgtc-ggaccatttgtccatgtatttggatgttcaagattcagctaatttgcccaatggttggagtagttatgcacagt |
39867906 |
T |
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| Q |
443 |
ttaatttgacagtagttgatcaattccataataa |
476 |
Q |
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| T |
39867905 |
ttagcttgacagtagttaatcaaatcaataataa |
39867872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 37476683 - 37476605
Alignment:
| Q |
369 |
gtggactatttctccaagtatttggatgttgcagattcagatagtttgccctatggt--gagtagatatgcacagttta |
445 |
Q |
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| T |
37476683 |
gtggactatttgtccatgtatttggatgttgcagattcaactagtctgccctacggttggagtagatatgcacagttta |
37476605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 39732780 - 39732843
Alignment:
| Q |
127 |
catgatgttcatttttctatttcagtagacat-atatacaatataatattttggttttggttga |
189 |
Q |
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| T |
39732780 |
catgatgtttatctttctatttcagttgacgtgatatacaatataatattttggttttgtttga |
39732843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 476
Target Start/End: Original strand, 36050201 - 36050311
Alignment:
| Q |
368 |
tgtggactatttctccaagtatttggatgttgcagattcagatagtttgccctatggt--gagtagatatgcacagtttaatttgacagtagttgatcaa |
465 |
Q |
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|||||||||||| |||| |||||||||||| || |||||| |||||||||||||||| |||||||||||||||||||| |||| || | ||| ||||| |
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| T |
36050201 |
tgtggactatttgtccatgtatttggatgtcgcggattcaactagtttgccctatggttggagtagatatgcacagtttagtttggcaattgttaatcaa |
36050300 |
T |
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| Q |
466 |
ttccataataa |
476 |
Q |
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|||||||||| |
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| T |
36050301 |
atccataataa |
36050311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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