View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14869_low_6 (Length: 479)
Name: NF14869_low_6
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14869_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 10102389 - 10101953
Alignment:
| Q |
17 |
atgaatgtcatgtaaatactagactaaaatggaacaatgcaaagagcctaagaaaaaa-ggatatctatatgattcagtattattaattaagtgaatgtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10102389 |
atgaatgtcatgtaaatactagactaaaaaggaacaatgcaaagagcctaagaaaaaaaggatatctatatgattcagtatta---attaagtgaatgtt |
10102293 |
T |
|
| Q |
116 |
ttaccttatttctactccttccactaataatggcagtaggaaaataactagcaacttcacgcacagctgcacgcatctgtatttgaaatacattcacaat |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10102292 |
ttaccttatttctacttcttccactaataatggcagtaggaaaataactagcaacttcacgcacagctgcacgcatctgtatttgaaat----tcacaat |
10102197 |
T |
|
| Q |
216 |
taagctttagagcaaataaattcaacatgagtactcacggtgactctgagggtgtggctgcacaaaactccattaattggtggcaccaatttatttattt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10102196 |
taagctttagagcaaataaattcaacatgagtactcacggtgactctgagggtgtggctgcacaaaacaccattaattggtggcaccaatttatttattt |
10102097 |
T |
|
| Q |
316 |
tcttgctaaaatttgacaaggataaaagcatttcacaagcttgtgtgtaattcatatttttatactaatattgttaaactttcactccaggttgtattaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10102096 |
tcttgctaaaatttgacaaggataaaagcatttcacaagcttttgtgtaattcatatttttatactaatattgttaaactttcactccaggttgtattaa |
10101997 |
T |
|
| Q |
416 |
aacatagaatggatagctttttgcacatcttttatgcaggctat |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10101996 |
aacatagaatggatagctttttgcacatcttttatgtaggctat |
10101953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University