View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14869_low_7 (Length: 418)

Name: NF14869_low_7
Description: NF14869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14869_low_7
NF14869_low_7
[»] chr2 (6 HSPs)
chr2 (365-400)||(35918850-35918885)
chr2 (211-256)||(35543693-35543738)
chr2 (211-256)||(35561435-35561480)
chr2 (228-268)||(34989409-34989449)
chr2 (211-253)||(35530258-35530300)
chr2 (219-275)||(35887109-35887163)


Alignment Details
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 400
Target Start/End: Original strand, 35918850 - 35918885
Alignment:
Q  365 ttccatagtgtttcttgacattaattacagaaaatc 400  Q
    ||||||||||||||||||||||||||||||||||||    
T  35918850 ttccatagtgtttcttgacattaattacagaaaatc 35918885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 35543738 - 35543693
Alignment:
Q  211 gttaacagttattgatcagttggcagttttctgttatggtatagtt 256  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||||    
T  35543738 gttaacagctattgattagttggtagttttctgttatggtatagtt 35543693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 35561480 - 35561435
Alignment:
Q  211 gttaacagttattgatcagttggcagttttctgttatggtatagtt 256  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||||    
T  35561480 gttaacagctattgattagttggtagttttctgttatggtatagtt 35561435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 34989409 - 34989449
Alignment:
Q  228 agttggcagttttctgttatggtatagttgatcagttagaa 268  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  34989409 agttggcagttttctgttatggtatagttgattggttagaa 34989449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 35530300 - 35530258
Alignment:
Q  211 gttaacagttattgatcagttggcagttttctgttatggtata 253  Q
    |||||||| ||||||| |||||| |||||||||||||||||||    
T  35530300 gttaacagctattgattagttggtagttttctgttatggtata 35530258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 35887109 - 35887163
Alignment:
Q  219 ttattgatcagttggcagttttctgttatggtatagttgatcagttagaagcagtta 275  Q
    ||||||||||||||| | ||||| ||||||||||  ||||| |||||||||||||||    
T  35887109 ttattgatcagttggaacttttcagttatggtat--ttgattagttagaagcagtta 35887163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University