View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_high_20 (Length: 307)
Name: NF1486_high_20
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 42271652 - 42271932
Alignment:
| Q |
10 |
ataatactagtggttcaacttcattcaatactaattttgagaagcacttaaatgggtacagtgaagctcttattgagaataatgaaaggttgacaaaatt |
109 |
Q |
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| T |
42271652 |
ataatactagtggttcaacttcattcaatactaattttgagaagcacttaaatgggtacagtgaagctcttattgagaataatgaaaggttgacaaaatt |
42271751 |
T |
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| Q |
110 |
atccaatcttgtaagcacttggtctattgccccacctgaccctgaagttagtagccactttgattcacaaacaaataacaatttgtctactaatttgaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271752 |
atccaatcttgtaagcacttggtctattgccccacctgaccctgaagttagtagccactttgattcacaaacaaataacaatttgtctactaatttgaat |
42271851 |
T |
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| Q |
210 |
aattctaattcatccaatatggatcataatcactacacacatgattctgaccctaattgtcatttcaaactaccttttggt |
290 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271852 |
aattctaattcgtccaatatggatcataatcactacacacatgattctgaccctaattgtcatttcaaactaccttttggt |
42271932 |
T |
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