View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_high_23 (Length: 289)
Name: NF1486_high_23
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 38666593 - 38666735
Alignment:
| Q |
9 |
gaaatgaaatgaaatgaacataaagttaaatgtgggtaccgggaagcaagttgtaataaaaatcggtgtgttaacgttagttcatatcaatgcaaggcgt |
108 |
Q |
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| T |
38666593 |
gaaatgaaatgaaatgaacataaagttaaatgtgggtaccgggaagcaagttgtaataaaaatcggtgtgttaacgtaagttcatatcaatgcaaggcgt |
38666692 |
T |
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| Q |
109 |
gcttagttactagctagcaaacatgttgatatgaaatatttgt |
151 |
Q |
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| T |
38666693 |
gcttagttactagctagcaaacatgttgatatgaaatatttgt |
38666735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 38666787 - 38666859
Alignment:
| Q |
201 |
aacgcatttgtttgcaaagtgtgcttaattactaacaagcaaacatggtttaaagtttatggggttaagtagt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38666787 |
aacgcatttgtttgcaaagtgtgcttaattactaacaagcaaacatcgtttaaagtttatggggttaagtagt |
38666859 |
T |
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