View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_high_24 (Length: 287)
Name: NF1486_high_24
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 42141570 - 42141394
Alignment:
| Q |
1 |
ctttacgttcaaaatattccaattcatctaatctatcccatcaaaatatatttgagaataaaatgaaac----aaaaaatcaaatagtcaatcccatttt |
96 |
Q |
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| T |
42141570 |
ctttgcgttcaaaatattccaattcatccaatccatcccatcaaaatagatttgagaataaaatgaaaagaaaaaaaaaacaaatagtcaa-cccatttt |
42141472 |
T |
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| Q |
97 |
ctttttctccgtagcctatgttgactgacttaaccttcatctccaaaattagaccccagtagtaaataccaatagtcatattatta |
182 |
Q |
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| T |
42141471 |
ctttttctccgtagcctatgt--------ataaccttcatctccaaaattagatcccagtagtaaatactaatagtcatattatta |
42141394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 42140990 - 42140919
Alignment:
| Q |
202 |
tttgactattaaaccttaacttaagaaactagtgcatgttaaacacatttagacgaaggtgtggtttaaatt |
273 |
Q |
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| T |
42140990 |
tttgactattaaaccttaacttaagaaagtagtgcatgttaaacacatttagatgaaggtatggtttaaatt |
42140919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 40885800 - 40885748
Alignment:
| Q |
23 |
ttcatctaatctatcccatcaaaatatatttgagaataaaatgaaacaaaaaa |
75 |
Q |
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| T |
40885800 |
ttcatctgatcaatcctattaaaatgtatttgagaataaaatgaaacataaaa |
40885748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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