View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_high_3 (Length: 500)
Name: NF1486_high_3
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 41 - 347
Target Start/End: Original strand, 22627702 - 22628012
Alignment:
| Q |
41 |
agatttacctctttcaagataatgattccaatgaatgtgtagcatctctttcaaccaaaaattataacatttt---gcccaagtnnnnnnnn-ggaagtg |
136 |
Q |
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| T |
22627702 |
agatttacctcattcaagataatgattccaatgaatgtgtagcatccctttcaaccaaaaactctaacatttttttgcccaagcaaaaagaaaggaagtg |
22627801 |
T |
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| Q |
137 |
aaacagtcgcatgtagctgtcgcggcgcggcggagatgatttccaatacagtggtcatcaattaaacttctccaatctagaaataaattgagggcttttg |
236 |
Q |
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| T |
22627802 |
aaacaggcgcatgtagctttcccgacgcggcggagatgatttccaatacagtggtcatcaattaaacttctccaatctagaaataaattgcgggcttttg |
22627901 |
T |
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| Q |
237 |
cagagtaaaaagagaggaatttaatgatgatagtgacgaggccaacagaagtcagaatacggcgataggtcaccgtttaggtgagctgatgatggtgttt |
336 |
Q |
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| T |
22627902 |
tagaggaaagagagaggaatttaatgatggtagtgatgcggccaacaaaagttggaatacggcgataggtcaccgtttaggtgagctgacgatggtgttt |
22628001 |
T |
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| Q |
337 |
tggaggaggag |
347 |
Q |
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| T |
22628002 |
tggagaaggag |
22628012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 19479467 - 19479384
Alignment:
| Q |
41 |
agatttacctctttcaagataatgat---tccaatgaatgtgtagcatctctttcaaccaaaaattataacattttgcccaagt |
121 |
Q |
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| T |
19479467 |
agatttacctctttcaagataatgatgattccaatgaatgtgtagcattcctttcaaccaaaaactctaacattttgcccaagt |
19479384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 52610282 - 52610216
Alignment:
| Q |
196 |
aattaaacttctccaatctagaaataaattgagggcttttgcagagtaaaaagagaggaatttaatg |
262 |
Q |
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| T |
52610282 |
aattaaacttctccaatctataaataaattgagggcttttgtagaggaagaagagaggaattcaatg |
52610216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 23473338 - 23473399
Alignment:
| Q |
196 |
aattaaacttctccaatctagaaataaattgagggcttttgcagagtaaaaagagaggaatt |
257 |
Q |
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| T |
23473338 |
aattaaacttctccaatctaaaaataaattgagggcttttgtagaggaagaagagaggaatt |
23473399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 23482834 - 23482900
Alignment:
| Q |
196 |
aattaaacttctccaatctagaaataaattgagggcttttgcagagtaaaaagagaggaatttaatg |
262 |
Q |
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| T |
23482834 |
aattaaacttcttcaatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatg |
23482900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 34906053 - 34906124
Alignment:
| Q |
196 |
aattaaacttctccaatctagaaataaattgagggcttttgcagagtaaaaagagaggaatttaatgatgat |
267 |
Q |
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| T |
34906053 |
aattaaacttctccaatctaaaaaaaaattgatggcttttgtagaggaagaagagaggaattcaatggtgat |
34906124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 11236082 - 11236016
Alignment:
| Q |
196 |
aattaaacttctccaatctagaaataaattgagggcttttgcagagtaaaaagagaggaatttaatg |
262 |
Q |
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| T |
11236082 |
aattaaacttcttcaatctaaaaataaattgagggcttttgtagagaaagaagagaggaattcaatg |
11236016 |
T |
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