View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1486_high_31 (Length: 212)

Name: NF1486_high_31
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1486_high_31
NF1486_high_31
[»] chr5 (3 HSPs)
chr5 (1-197)||(13858342-13858538)
chr5 (44-146)||(13859941-13860043)
chr5 (136-197)||(6454506-6454567)
[»] chr2 (3 HSPs)
chr2 (84-195)||(5816257-5816369)
chr2 (131-197)||(14389691-14389757)
chr2 (97-197)||(5813555-5813655)
[»] chr1 (7 HSPs)
chr1 (87-197)||(4033227-4033339)
chr1 (136-194)||(46135822-46135880)
chr1 (133-197)||(3449105-3449169)
chr1 (84-197)||(3447349-3447461)
chr1 (86-179)||(12181527-12181621)
chr1 (146-186)||(13995591-13995631)
chr1 (146-186)||(14003705-14003745)
[»] chr3 (4 HSPs)
chr3 (84-197)||(34618994-34619108)
chr3 (135-197)||(52655441-52655503)
chr3 (131-197)||(49089470-49089536)
chr3 (131-182)||(49095268-49095319)
[»] chr4 (5 HSPs)
chr4 (87-197)||(4897373-4897485)
chr4 (84-154)||(42430684-42430755)
chr4 (132-193)||(36761717-36761779)
chr4 (84-157)||(49058152-49058226)
chr4 (139-197)||(49408660-49408718)
[»] chr7 (4 HSPs)
chr7 (137-188)||(41397834-41397885)
chr7 (84-194)||(22130632-22130740)
chr7 (84-194)||(40500366-40500474)
chr7 (141-197)||(26198901-26198957)
[»] chr8 (2 HSPs)
chr8 (131-195)||(7305639-7305703)
chr8 (141-197)||(7303106-7303161)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 13858538 - 13858342
Alignment:
Q  1 aaaacagtctgaacatcgtacgattctacatttcaagcttatcatacatgtctctattttattatcttcaccatggctggtctaagggggctgacactaa 100  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  13858538 aaaacagcctgaacatcgtatgactctacatttcaagcttatcatacatgtctctattttactatcttcaccatggctggtctaagggagctgacactaa 13858439  T
Q  101 agcaaaggctttaggccccaaatttttaacgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13858438 agcaaaggctttaggccccgaatttttaacgccccgtattaggcctcatatttttgtttttgaaaatatttttgaacgtcaaattttgtaaacatgt 13858342  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 13859941 - 13860043
Alignment:
Q  44 atacatgtctctattttattatcttcaccatggctggtctaagggggctgacactaaagcaaaggctttaggcc-ccaaatttttaacgccccgtattag 142  Q
    |||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||     
T  13859941 atacatgtctctattttactatcttcacca-ggccggtctaagggggctgacaataaagcaaatgctttaggcctccaaattttcaacgccccgtattat 13860039  T
Q  143 gcct 146  Q
    ||||    
T  13860040 gcct 13860043  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 6454567 - 6454506
Alignment:
Q  136 gtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    ||||||| |||||||||||| | ||||||||||||| || || |||||||||||||||||||    
T  6454567 gtattagacctcatatttttatgtttgaaaatatttccgtacatcaaattttgtaaacatgt 6454506  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 5816257 - 5816369
Alignment:
Q  84 aagggggctgacactaaagcaaaggctttagg-ccccaaatttttaacgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaa 182  Q
    |||||||||| |||||||||||||| |||||| |||||| ||||| | || ||||| |||||||||||||||||| |||||||||||||| | | |||||    
T  5816257 aagggggctgccactaaagcaaaggttttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtcaa 5816356  T
Q  183 attttgtaaacat 195  Q
    |||||||||||||    
T  5816357 attttgtaaacat 5816369  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 14389691 - 14389757
Alignment:
Q  131 gccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |||| ||||    
T  14389691 gccccgtattaggcctcatatttttatctttgaaaatattttcgtacgtcaaattttataaatatgt 14389757  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 5813655 - 5813555
Alignment:
Q  97 ctaaagcaaaggctttaggccccaaa-tttttaacgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacat 195  Q
    ||||||||| ||||||||||||| || ||||| |  | |||||||| ||||| ||||||| | |||||||||||||| | | ||||||||||||||||||    
T  5813655 ctaaagcaatggctttaggcccccaagttttttagtctccgtattaagcctcgtattttt-tctttgaaaatatttttgtatgtcaaattttgtaaacat 5813557  T
Q  196 gt 197  Q
    ||    
T  5813556 gt 5813555  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 4033339 - 4033227
Alignment:
Q  87 ggggctgacactaaagcaaaggctttaggccccaaattttta-acgccccgtattaggcctcatatttttgtttttg-aaaatattttcgaacgtcaaat 184  Q
    ||||||| |||||||||||||| |||||||||| |||||||  | |  |||||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  4033339 ggggctgccactaaagcaaaggttttaggcccctaatttttttaggttccgtattaggcctcatatttttgtctttggaaaatattttcgcacgtcaaat 4033240  T
Q  185 tttgtaaacatgt 197  Q
    |||||||||||||    
T  4033239 tttgtaaacatgt 4033227  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 46135880 - 46135822
Alignment:
Q  136 gtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaaca 194  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||||||| |||||||    
T  46135880 gtattaggcctcatatttttatctttgaaaatattttcgtacgtcaaatttcgtaaaca 46135822  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 3449169 - 3449105
Alignment:
Q  133 cccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    ||||||||||| ||||||||||| | |||||||||||||||| |||| |||||||| ||| ||||    
T  3449169 cccgtattaggtctcatatttttatgtttgaaaatattttcgtacgttaaattttgcaaatatgt 3449105  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 3447461 - 3447349
Alignment:
Q  84 aagggggctgacactaaagcaaaggctttaggccccaaa-tttttaacgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaa 182  Q
    ||||||| || ||||||||||| |||||||||||||  | ||||| | ||||| |||| || |||||||||  || ||| |||||||||| | |||||||    
T  3447461 aagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatatttggtctcatattt--gtctttaaaaatatttttgtacgtcaa 3447364  T
Q  183 attttgtaaacatgt 197  Q
    ||||| |||||||||    
T  3447363 attttataaacatgt 3447349  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 12181621 - 12181527
Alignment:
Q  86 gggggctgacactaaagcaaaggctttaggccccaaa-tttttaacgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgt 179  Q
    |||||||  ||||||| ||| |||||||||||||  | ||||| | | | ||||||||||||| ||||||||| |||||||||||||||| ||||    
T  12181621 gggggctaccactaaatcaagggctttaggcccccgagttttttaggtctcgtattaggcctcgtatttttgtctttgaaaatattttcgtacgt 12181527  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 13995591 - 13995631
Alignment:
Q  146 tcatatttttgtttttgaaaatattttcgaacgtcaaattt 186  Q
    |||||||||| |||||||||||||||| | |||||||||||    
T  13995591 tcatatttttatttttgaaaatattttagtacgtcaaattt 13995631  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 14003705 - 14003745
Alignment:
Q  146 tcatatttttgtttttgaaaatattttcgaacgtcaaattt 186  Q
    |||||||||| |||||||||||||||| | |||||||||||    
T  14003705 tcatatttttatttttgaaaatattttagtacgtcaaattt 14003745  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 34619108 - 34618994
Alignment:
Q  84 aagggggctgacactaaagcaaaggctttaggcccc-aaatttttaacgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaa 182  Q
    |||||||||| |||||||||||   ||||||||||| |||| ||  || ||||||||||||| |||||||||||| |||||||||||||||| || ||||    
T  34619108 aagggggctgccactaaagcaagaactttaggcccccaaatattgtactccccgtattaggcttcatatttttgtctttgaaaatattttcgtacatcaa 34619009  T
Q  183 attttgtaaacatgt 197  Q
    |||||||||||||||    
T  34619008 attttgtaaacatgt 34618994  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 52655441 - 52655503
Alignment:
Q  135 cgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  52655441 cgtattatgccttatatttttgtttttgaaaatattttcgtacgttagattttgtaaacatgt 52655503  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 49089470 - 49089536
Alignment:
Q  131 gccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    |||| ||||||||||||  || ||||| |||  ||||||||||| ||||||||||||||||||||||    
T  49089470 gcccagtattaggcctccaatctttgtctttacaaatattttcgtacgtcaaattttgtaaacatgt 49089536  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 49095268 - 49095319
Alignment:
Q  131 gccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaa 182  Q
    ||||||||||||||||| ||||||||| |||| |||||||| || |||||||    
T  49095268 gccccgtattaggcctcctatttttgtctttggaaatatttccgtacgtcaa 49095319  T

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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 4897373 - 4897485
Alignment:
Q  87 ggggctgacactaaagcaaaggctttaggccccaaattttta--acgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaat 184  Q
    ||||||| ||||||||||| |||| |||||||| || |||||  | | ||||||||||||||||||||||| ||||||||||||| |||| |||| ||||    
T  4897373 ggggctggcactaaagcaagggctctaggcccccaagttttattaggtcccgtattaggcctcatatttttatttttgaaaatatattcgcacgtgaaat 4897472  T
Q  185 tttgtaaacatgt 197  Q
    |||||| ||||||    
T  4897473 tttgtagacatgt 4897485  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 42430684 - 42430755
Alignment:
Q  84 aagggggctgacactaaagcaaaggctttagg-ccccaaatttttaacgccccgtattaggcctcatatttt 154  Q
    |||||||||| ||||||||||||||||||||| |||| | ||||| | | ||||||||||||||||||||||    
T  42430684 aagggggctgccactaaagcaaaggctttaggcccccgagttttttaggtcccgtattaggcctcatatttt 42430755  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 36761717 - 36761779
Alignment:
Q  132 ccccgtattaggcctcatatttttgtttttgaaaata-ttttcgaacgtcaaattttgtaaac 193  Q
    ||||||||||| |||| ||||||||| |||||||||| |||||| ||||||||||||||||||    
T  36761717 ccccgtattagacctcgtatttttgtctttgaaaatatttttcgtacgtcaaattttgtaaac 36761779  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 49058152 - 49058226
Alignment:
Q  84 aagggggctgacactaaagcaaaggctttagg-ccccaaatttttaacgccccgtattaggcctcatatttttgt 157  Q
    ||||||| || |||||||||||||| |||||| |||||| ||||| | | |||||||||||| ||||||||||||    
T  49058152 aagggggttgccactaaagcaaaggttttaggcccccaagtttttcaagtcccgtattaggcatcatatttttgt 49058226  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 49408660 - 49408718
Alignment:
Q  139 ttaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    ||||||||||||||| ||| |||  ||||||||||| | |||||||||| |||||||||    
T  49408660 ttaggcctcatatttgtgtctttagaaatattttcgtatgtcaaattttctaaacatgt 49408718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 41397885 - 41397834
Alignment:
Q  137 tattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttg 188  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  41397885 tattaggccccatatttttgtctttgaaaatattttcgtacgtcaaattttg 41397834  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 22130740 - 22130632
Alignment:
Q  84 aagggggctgacactaaagcaaaggctttaggccccaaa-tttttaacgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaa 182  Q
    ||||| |||| ||| ||||||| ||||||||||||| || ||||| | ||  |||||| |||||||||||||||  ||||||||||||||   |||| ||    
T  22130740 aagggagctgccaccaaagcaagggctttaggcccccaagttttttaggcttcgtattcggcctcatatttttgactttgaaaatatttt---acgttaa 22130644  T
Q  183 attttgtaaaca 194  Q
    ||||||||||||    
T  22130643 attttgtaaaca 22130632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 40500366 - 40500474
Alignment:
Q  84 aagggggctgacactaaagcaaaggctttaggccccaaa-tttttaacgccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaa 182  Q
    ||||| |||| ||| ||||||| ||||||||||||| || ||||| | ||  |||||| |||||||||||||||  ||||||||||||||   |||| ||    
T  40500366 aagggagctgccaccaaagcaagggctttaggcccccaagttttttaggcttcgtattcggcctcatatttttgactttgaaaatatttt---acgttaa 40500462  T
Q  183 attttgtaaaca 194  Q
    ||||||||||||    
T  40500463 attttgtaaaca 40500474  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 26198901 - 26198957
Alignment:
Q  141 aggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    ||||||||||||||| | ||||||||||||| || ||||||||||| || |||||||    
T  26198901 aggcctcatatttttatctttgaaaatatttccgtacgtcaaatttcgttaacatgt 26198957  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 7305703 - 7305639
Alignment:
Q  131 gccccgtattaggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacat 195  Q
    |||||||  |||||||||||||||| |||||||||||||||||  |||||||| || ||||||||    
T  7305703 gccccgtgataggcctcatatttttatttttgaaaatattttcatacgtcaaaattcgtaaacat 7305639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 7303161 - 7303106
Alignment:
Q  141 aggcctcatatttttgtttttgaaaatattttcgaacgtcaaattttgtaaacatgt 197  Q
    ||||||||||||||| | |||||||||||||||  ||||||||||| ||||||||||    
T  7303161 aggcctcatatttttatctttgaaaatattttc-tacgtcaaatttcgtaaacatgt 7303106  T

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