View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1486_high_7 (Length: 474)

Name: NF1486_high_7
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1486_high_7
NF1486_high_7
[»] chr6 (3 HSPs)
chr6 (74-263)||(9869683-9869871)
chr6 (81-457)||(21842690-21843065)
chr6 (153-190)||(21034188-21034225)
[»] chr8 (5 HSPs)
chr8 (81-457)||(24720554-24720929)
chr8 (89-230)||(14998305-14998448)
chr8 (81-230)||(26828200-26828352)
chr8 (81-233)||(25232132-25232286)
chr8 (158-292)||(21327903-21328038)
[»] chr7 (2 HSPs)
chr7 (81-457)||(19202934-19203309)
chr7 (74-191)||(1586974-1587092)
[»] scaffold0056 (1 HSPs)
scaffold0056 (197-439)||(23767-24007)
[»] chr5 (4 HSPs)
chr5 (81-233)||(19054586-19054739)
chr5 (81-230)||(24319005-24319155)
chr5 (74-243)||(16783198-16783370)
chr5 (81-230)||(25404883-25405032)
[»] chr3 (4 HSPs)
chr3 (81-189)||(34275012-34275120)
chr3 (83-228)||(12769709-12769854)
chr3 (85-230)||(16227512-16227658)
chr3 (81-126)||(19577844-19577889)
[»] chr2 (3 HSPs)
chr2 (81-230)||(28923007-28923157)
chr2 (81-160)||(16816206-16816285)
chr2 (81-160)||(16855363-16855442)
[»] chr4 (1 HSPs)
chr4 (81-178)||(12609382-12609479)
[»] scaffold0711 (1 HSPs)
scaffold0711 (81-190)||(6172-6281)
[»] chr1 (1 HSPs)
chr1 (81-152)||(18828843-18828914)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 74 - 263
Target Start/End: Complemental strand, 9869871 - 9869683
Alignment:
Q  74 tgggttgctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaat 173  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||||||| | ||| ||| |||| ||||||| |||| ||||||||||||||||||||    
T  9869871 tgggttgctccaattcaacgcttgtttaacgtttgaatctctacggtcaatgg-ttgcctcatattcagtgcttattttaagtcattatcttgacgaaat 9869773  T
Q  174 aggttgcctcttattcaatgctatttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttc 263  Q
    ||||||||||||||||||  |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9869772 aggttgcctcttattcaacactatttagcgtccctagcctgacggatatgtctaactgttgcattcagacttttgagcagctggtttttc 9869683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 81 - 457
Target Start/End: Complemental strand, 21843065 - 21842690
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc 180  Q
    ||||| ||||||||||||||||||||||| |||  ||||||||||| ||| |||||||| ||||||||||||||||||||| |||||| |||||||||||    
T  21843065 ctccctttcagcgcttgtttaacgtctgagtctagacggtcaataggttgcctcctattcagtgcttcttttgagtcattagcttgacaaaataggttgc 21842966  T
Q  181 ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttctctccaactaccttgg 279  Q
    ||| ||||||  || | |||||||||||||||||||| ||||||||||| |||    || || |  ||||| ||||  ||||| |||||| |||||| ||    
T  21842965 ctcctattcagcgcgtgtttagcgtcccgagcctgacggatatgtctaagtgtcttgtttaggcccttgagtagctaatttttttctccagctacctagg 21842866  T
Q  280 tcttgcatatagtctcgcaggtgcatgacttcctcaattaggaccttggcgaaccatctattgtggaccttaatctcaacaagattgttcttgcagatgc 379  Q
     ||  ||||||||||||||| ||||| |||||||  ||| | ||||| || | ||||||| | ||| |||| |||||||||  |||||||||||| ||||    
T  21842865 cctgtcatatagtctcgcagatgcattacttccttgattggaacctttgccatccatctagtctggtccttgatctcaacacaattgttcttgcatatgc 21842766  T
Q  380 aatttatttggaaaggcccataccaagccttatacgcatgagagtaggtggatagaaaagctcatgtgatttgatcat 457  Q
      ||||||| |||| ||||||||||||||||||  | |  ||||||| ||| |||||||||||||| |||||||||||    
T  21842765 ggtttatttcgaaacgcccataccaagccttat--gtacaagagtagctgggtagaaaagctcatgggatttgatcat 21842690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 21034188 - 21034225
Alignment:
Q  153 gagtcattatcttgacgaaataggttgcctcttattca 190  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  21034188 gagtcattagcttgacaaaataggttgcctcttattca 21034225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 81 - 457
Target Start/End: Complemental strand, 24720929 - 24720554
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc 180  Q
    |||| ||| |||||||||||||||||||| || | ||||||||||  ||| |||||||| |  |||||||||||||||||| |||||||||||| |||||    
T  24720929 ctcctattaagcgcttgtttaacgtctgagtcccgacggtcaataagttgcctcctattcaacgcttcttttgagtcattagcttgacgaaataagttgc 24720830  T
Q  181 ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttctctccaactaccttgg 279  Q
    ||| ||||||  || | ||||||||||||| ||| ||  |||||||||| |||    |||||||  ||||| ||||| |||||| |||||||||| | ||    
T  24720829 ctcctattcagcgcgtgtttagcgtcccgaacctaacgaatatgtctaagtgtcttgttcagacccttgagtagctgatttttccctccaactacttagg 24720730  T
Q  280 tcttgcatatagtctcgcaggtgcatgacttcctcaattaggaccttggcgaaccatctattgtggaccttaatctcaacaagattgttcttgcagatgc 379  Q
     ||  ||||||||||||||  |||||||||||||| ||| ||||||| || | ||||||| ||||| |||| ||||||||| ||||||||||||| ||||    
T  24720729 cctgccatatagtctcgcaaatgcatgacttcctcgattgggacctttgccatccatctagtgtggtccttgatctcaacacgattgttcttgcatatgc 24720630  T
Q  380 aatttatttggaaaggcccataccaagccttatacgcatgagagtaggtggatagaaaagctcatgtgatttgatcat 457  Q
      ||||||| |||||| ||||||||||||||||  | || |||||||||||||| ||||| ||||  |||||||||||    
T  24720629 ggtttatttcgaaaggtccataccaagccttat--gtataagagtaggtggataaaaaagttcataggatttgatcat 24720554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 89 - 230
Target Start/End: Original strand, 14998305 - 14998448
Alignment:
Q  89 cagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacg-aaataggttgcctcttat 187  Q
    ||||||||||||||||||||| || | ||||||||||| |||||||||||| |   ||||||||||||||||| ||||||| |||||||||||||| |||    
T  14998305 cagcgcttgtttaacgtctgattcccgacggtcaataggttgtctcctattcaacacttcttttgagtcattagcttgacgaaaataggttgcctcctat 14998404  T
Q  188 tcaatgc-tatttagcgtcccgagcctgacagatatgtctaact 230  Q
    |||| || | |||||| ||||||||||||| | |||||||||||    
T  14998405 tcaacgcgtgtttagcatcccgagcctgacggttatgtctaact 14998448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 230
Target Start/End: Complemental strand, 26828352 - 26828200
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacga-aataggttg 179  Q
    |||||||||| |||||||||||||| ||| ||   ||||||||||| ||| ||||||||||  |||||||||||| ||||| |||||||| |||||||||    
T  26828352 ctcccattcaacgcttgtttaacgtatgagtcctgacggtcaataggttgcctcctatttaacgcttcttttgagccattagcttgacgataataggttg 26828253  T
Q  180 cctcttattcaatg-ctatttagcgtcccgagcctgacagata-tgtctaact 230  Q
     ||| ||||||| |  | ||||||||||||||||||||| ||| |||||||||    
T  26828252 tctcctattcaacgtgtgtttagcgtcccgagcctgacatatattgtctaact 26828200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 25232132 - 25232286
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaa--taggtt 178  Q
    |||||||||| | |||||||||| | ||| ||   ||||||||||| |||  ||||||| |  ||||| |||||||||||| |||| |||||  ||||||    
T  25232132 ctcccattcaacacttgtttaacatttgagtcctgacggtcaataggttgcatcctattcaacgcttcatttgagtcattagcttg-cgaaaaataggtt 25232230  T
Q  179 gcctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgtt 233  Q
    ||||| ||||||  || | ||||||||||||||| |||  ||||||||||| ||||    
T  25232231 gcctcctattcagcgcgtgtttagcgtcccgagcttgaaggatatgtctaagtgtt 25232286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 292
Target Start/End: Original strand, 21327903 - 21328038
Alignment:
Q  158 attatcttgacgaaataggttgcctcttattcaatgcta-tttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctg 256  Q
    |||| |||||| ||||||||| |||| |||||| || |  ||||||||||||| ||||||  |||||||||| |||||  ||||||| |||||| || ||    
T  21327903 attagcttgacaaaataggtttcctcctattcagtgtttgtttagcgtcccgaccctgacgaatatgtctaagtgttgttttcagacctttgagaagttg 21328002  T
Q  257 gtttttctctccaactaccttggtcttgcatatagt 292  Q
     |||  | || | ||||| | |||||||||||||||    
T  21328003 atttccccctaccactacttaggtcttgcatatagt 21328038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 81 - 457
Target Start/End: Original strand, 19202934 - 19203309
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc 180  Q
    ||||||||||||||||||||||||||||| || | ||||||||||| ||| ||||||||    |||||||||||||||||| |||| |||||||| ||||    
T  19202934 ctcccattcagcgcttgtttaacgtctgagtcccgacggtcaataggttgcctcctattcgacgcttcttttgagtcattaacttgtcgaaatagattgc 19203033  T
Q  181 ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttctctccaactaccttgg 279  Q
    ||| || ||| ||  |  ||||| ||| |||||||||| |||||||||| ||||  | |||||   | ||||||  |||||||| |||||||||| || |    
T  19203034 ctcctactcagtgtgtggttagcttcctgagcctgacatatatgtctaagtgttaaactcagatcctggagcagacggtttttccctccaactac-ttag 19203132  T
Q  280 tcttgca-tatagtctcgcaggtgcatgacttcctcaattaggaccttggcgaaccatctattgtggaccttaatctcaacaagattgttcttgcagatg 378  Q
     | || | |||||||||||| ||||||||||||||||||| ||||||| |  | ||| ||| ||||| | || ||||||||| ||||||||||||| |||    
T  19203133 acatgtaatatagtctcgcacgtgcatgacttcctcaattgggacctttgtcatccacctagtgtggtctttgatctcaacacgattgttcttgcatatg 19203232  T
Q  379 caatttatttggaaaggcccataccaagccttatacgcatgagagtaggtggatagaaaagctcatgtgatttgatcat 457  Q
    |  ||||||| ||||||| |||||||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||    
T  19203233 cggtttatttcgaaaggcacataccaagccttat--gcatgagagtaggtggatagaaaagttcatgggatttgatcat 19203309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 1586974 - 1587092
Alignment:
Q  74 tgggttgct-cccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaa 172  Q
    ||||||||| ||||||||||||||||||||||||| | || | ||| ||||||| ||| |||||| |||| ||||||||| ||| | || ||||||| ||    
T  1586974 tgggttgcttcccattcagcgcttgtttaacgtctcagtcccgacgatcaataggttgcctcctaattagagcttcttttaagttactagcttgacggaa 1587073  T
Q  173 taggttgcctcttattcaa 191  Q
    ||||||||||| |||||||    
T  1587074 taggttgcctcctattcaa 1587092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 197 - 439
Target Start/End: Original strand, 23767 - 24007
Alignment:
Q  197 tttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttctctccaactaccttggtcttgcatatagtctcg 296  Q
    |||| ||||||||||| ||| ||||||||||| ||||  ||||  ||   |||||||||| |||||| |||||||||| | || ||  |||||||||  |    
T  23767 tttaacgtcccgagccggacggatatgtctaagtgttttattcttacccatgagcagctgatttttccctccaactacttaggcctgccatatagtcctg 23866  T
Q  297 caggtgcatgacttcctcaattaggaccttggcgaaccatctattgtggaccttaatctcaacaagattgttcttgcagatgcaatttatttggaaaggc 396  Q
    ||| |||||||||| ||| ||| |||||||||  | ||||||| ||||| |||| ||||||||| | |||||||| || ||||||||||||| |||||||    
T  23867 cagatgcatgactttctccattgggaccttggttatccatctagtgtggtccttgatctcaacacggttgttcttacatatgcaatttatttcgaaaggc 23966  T
Q  397 ccataccaagccttatacgcatgagagtaggtggatagaaaag 439  Q
    ||||||||||||||||  ||| ||||||||| |||||||||||    
T  23967 ccataccaagccttat--gcacgagagtaggcggatagaaaag 24007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 19054586 - 19054739
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc 180  Q
    ||||||||||||| ||||||||||||||| || |  ||||||||||||||||||||||  || ||||||||| |||||||| ||| ||||||||||||||    
T  19054586 ctcccattcagcgtttgtttaacgtctgagtcccagcggtcaatagattgtctcctatccagcgcttcttttaagtcattagcttaacgaaataggttgc 19054685  T
Q  181 ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgtt 233  Q
    ||| ||||||  || | ||||||||||||||||||||| |||| ||||| ||||    
T  19054686 ctcctattcaccgcgtgtttagcgtcccgagcctgacaaatatctctaagtgtt 19054739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 81 - 230
Target Start/End: Complemental strand, 24319155 - 24319005
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc 180  Q
    |||||||||| ||||| ||||| ||| || || | || |||||||| ||| |||||||| |||||||||||| | |||||| ||||||||||||||||||    
T  24319155 ctcccattcaacgcttttttaatgtccgagtcccaacagtcaataggttgcctcctattcagtgcttcttttcattcattagcttgacgaaataggttgc 24319056  T
Q  181 ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaact 230  Q
    ||| ||||||  || | ||||||||||||||||||||||||||||||||||    
T  24319055 ctcctattcagcgcgtgtttagcgtcccgagcctgacagatatgtctaact 24319005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 16783370 - 16783198
Alignment:
Q  74 tgggttgc-tcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgac-gaa 171  Q
    |||||||| |||| ||||||||||||| ||||||||| || | ||||| ||||| ||| |||||||| || ||||||||| |||||||| || |||  ||    
T  16783370 tgggttgcatccccttcagcgcttgttcaacgtctgagtcccgacggttaataggttgcctcctattcagcgcttcttttaagtcattagctagacaaaa 16783271  T
Q  172 ataggttgcctcttattcaatg-ctatttagcgtcccgagcctgacagatatgtctaactgttgcattcagac 243  Q
    |||||||| ||| |||||||||  | ||||||||||| || ||||| ||||||||||| ||||| | ||||||    
T  16783270 ataggttgtctcctattcaatgtgtgtttagcgtcccaagtctgacggatatgtctaagtgttgaactcagac 16783198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 230
Target Start/End: Complemental strand, 25405032 - 25404883
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc 180  Q
    |||||||||| | ||||||||||||||||||| | | ||||||||| ||  |||||||  | | ||||||||||||||||| |||||| |||||||||||    
T  25405032 ctcccattcaacacttgtttaacgtctgaatcccgatggtcaataggtttcctcctatccact-cttcttttgagtcattaacttgacaaaataggttgc 25404934  T
Q  181 ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaact 230  Q
     || |||| | ||| | ||||| ||||| |||||||| |||||||||||||    
T  25404933 atcctatttagtgcgtgtttagagtccctagcctgacggatatgtctaact 25404883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 34275120 - 34275012
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc 180  Q
    |||||||||||||||| |||||| ||||| || | |||||||||||  || |||||||| |  ||| |||||||||||||| ||||||||||||||||||    
T  34275120 ctcccattcagcgcttctttaacatctgagtcccgacggtcaataggctgcctcctattcaacgctacttttgagtcattagcttgacgaaataggttgc 34275021  T
Q  181 ctcttattc 189  Q
    ||| |||||    
T  34275020 ctcctattc 34275012  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 12769854 - 12769709
Alignment:
Q  83 cccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgcct 182  Q
    |||||||| ||||| ||||||||| || || | ||| |||||| |||| |||||||| ||   |||||||||||||||| ||||| ||||||||||| ||    
T  12769854 cccattcaacgcttctttaacgtccgagtcccgacgatcaata-attgcctcctattcagcatttcttttgagtcattagcttgatgaaataggttgtct 12769756  T
Q  183 cttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaa 228  Q
    | |||||||  | | ||| ||||||||||||||||| ||||||||||    
T  12769755 cctattcaacacttgttttgcgtcccgagcctgacatatatgtctaa 12769709  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 16227512 - 16227658
Alignment:
Q  85 cattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgcctct 184  Q
    |||||||||| ||||||| || ||| |||| ||||||||||| ||| |||||||  | ||| |||||| |||||||  ||||||||||||||||  |||     
T  16227512 cattcagcgcatgtttaaagtgtgagtctcgacggtcaataggttgcctcctatccactgcgtctttttagtcattggcttgacgaaataggttttctcc 16227611  T
Q  185 tattcaatgc-tatttagcgtcccgagcctgacagatatgtctaact 230  Q
    ||||||  || | ||||||||||| | | ||||| ||||||||||||    
T  16227612 tattcagcgcgtgtttagcgtcccaaacttgacaaatatgtctaact 16227658  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 19577889 - 19577844
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatag 126  Q
    ||||||||||||||||||||||||||||| ||   |||||||||||    
T  19577889 ctcccattcagcgcttgtttaacgtctgagtccagacggtcaatag 19577844  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 28923007 - 28923157
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc 180  Q
    ||||||||||| | ||||||||||||||| || | ||| | ||||| | | |||||||| |   |||||||| |||||||| ||||||||||||||||||    
T  28923007 ctcccattcagtgtttgtttaacgtctgagtcccgacgattaataggtggcctcctattcatcacttctttttagtcattagcttgacgaaataggttgc 28923106  T
Q  181 ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaact 230  Q
    ||| || ||  ||| | ||||||||||||||||| ||||||| ||||||||    
T  28923107 ctcctactcggtgcgtgtttagcgtcccgagccttacagataggtctaact 28923157  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 16816206 - 16816285
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcatt 160  Q
    ||||||||||||||||||||||||||| | || | | | ||||||| ||  ||||| || |||| |||||||||||||||    
T  16816206 ctcccattcagcgcttgtttaacgtcttagtcccgatgatcaataggtttcctcctgttcagtgattcttttgagtcatt 16816285  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 16855363 - 16855442
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcatt 160  Q
    ||||||||||||||||||||||||||| | || | | | ||||||| ||  ||||| || |||| |||||||||||||||    
T  16855363 ctcccattcagcgcttgtttaacgtcttagtcccgatgatcaataggtttcctcctgttcagtgattcttttgagtcatt 16855442  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 178
Target Start/End: Original strand, 12609382 - 12609479
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggtt 178  Q
    |||||||||| |||||| ||||||||||| |||| ||||||||||| |||||||||||  || ||||||||  |||||||| ||| ||||||||||||    
T  12609382 ctcccattcaacgcttggttaacgtctgagtctcgacggtcaataggttgtctcctatcaagcgcttctttcaagtcattagctttacgaaataggtt 12609479  T

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Target: scaffold0711 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 6281 - 6172
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctct-acggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttg 179  Q
    |||||||||||| ||| |||||||||| | | ||| | ||||||||| |||||||||||| |   |||||||||| | ||||||||||||||||||||||    
T  6281 ctcccattcagctcttttttaacgtcttagt-tctgatggtcaataggttgtctcctattcatcacttcttttgaattattatcttgacgaaataggttg 6183  T
Q  180 cctcttattca 190  Q
     ||| ||||||    
T  6182 tctcctattca 6172  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 18828843 - 18828914
Alignment:
Q  81 ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttctttt 152  Q
    ||||||||||||||||||||||||||||| || | ||  ||||||| ||| |||||||| || |||||||||    
T  18828843 ctcccattcagcgcttgtttaacgtctgattcccaactctcaataggttgcctcctattcagcgcttctttt 18828914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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