View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_high_8 (Length: 423)
Name: NF1486_high_8
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_high_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 21 - 423
Target Start/End: Original strand, 14808197 - 14808599
Alignment:
| Q |
21 |
aaagtgtttggatagagccaagcaagcatgtcaacttttgttatggataatacttttggatgtcaccatattgaaaacactccatggatatcaaaggaat |
120 |
Q |
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| T |
14808197 |
aaagtgtttggatagagccaagcaagcatgtcaacttttgttatggataatacttttggatgtcaccatattgaaaacactccatggatatcaaaggaat |
14808296 |
T |
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| Q |
121 |
tgactcaacagggacagttgtggatccaccagcaacattagatgattgacctgtgaacaaaagataaaaatcataccaaatacttaaaatatactatata |
220 |
Q |
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| T |
14808297 |
tgactcaacagggacagttgtggatccaccagcaacattagatgattgacctgtgaacaaaagataaaaatcataccaaatacttaaaatatactatata |
14808396 |
T |
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| Q |
221 |
taatgacttgaatggttaataatccaccaagatacactgcaagtacaaaaataaacataaacatatataaaccataactagtccagatgaacctaaaatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14808397 |
taatgacttgaatggttaataatccaccaagatacactgcaagtacaaaaataaacataaacatatataaaccataaccagtccagatgaacctaaaatc |
14808496 |
T |
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| Q |
321 |
aatcttaaacacacaaagccaatggaacaaatagaagtaacagagctacaaatcgaagatcacctagctggtcaccagcatcagagagactgatgtacaa |
420 |
Q |
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| T |
14808497 |
aatcttaaacacacaaagccaatggaacaaatagaagtaacagagctacaaatcgaagatcacctagctggtcaccaacatcagagagactgatgtacaa |
14808596 |
T |
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| Q |
421 |
tga |
423 |
Q |
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| T |
14808597 |
tga |
14808599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 55028776 - 55028816
Alignment:
| Q |
15 |
tatctgaaagtgtttggatagagccaagcaagcatgtcaac |
55 |
Q |
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| T |
55028776 |
tatctcaaagtgtttggatagagccaagcaagcatgtcaac |
55028816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 19748315 - 19748276
Alignment:
| Q |
15 |
tatctgaaagtgtttggatagagccaagcaagcatgtcaa |
54 |
Q |
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| T |
19748315 |
tatctcaaagtgtttggatagagccaagcaagcatgtcaa |
19748276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 15942029 - 15942142
Alignment:
| Q |
83 |
tcaccatattgaaaacactccatggatatcaaaggaattgactcaacagggacagttgtggatccaccagcaacattagatgattgacctgtgaacaaaa |
182 |
Q |
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| T |
15942029 |
tcaccatgttgaaaacactccatggatatcaaaggaattgactcaacagggacagttgtggatgcaccaacaacattagatgattgacatgtgaacaaaa |
15942128 |
T |
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| Q |
183 |
gataaaaatcatac |
196 |
Q |
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| T |
15942129 |
gagaaaaatcatac |
15942142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 25645920 - 25645953
Alignment:
| Q |
22 |
aagtgtttggatagagccaagcaagcatgtcaac |
55 |
Q |
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| T |
25645920 |
aagtgtttggatagagccaagcaagcatgtcaac |
25645953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 8926750 - 8926710
Alignment:
| Q |
15 |
tatctgaaagtgtttggatagagccaagcaagcatgtcaac |
55 |
Q |
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| T |
8926750 |
tatctcaaagtgtttgaatagagccaagcaagcatgtcaac |
8926710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 8937007 - 8936967
Alignment:
| Q |
15 |
tatctgaaagtgtttggatagagccaagcaagcatgtcaac |
55 |
Q |
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||||| |||||||||| |||||||||||||||||||||||| |
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| T |
8937007 |
tatctcaaagtgtttgaatagagccaagcaagcatgtcaac |
8936967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 9020889 - 9020853
Alignment:
| Q |
15 |
tatctgaaagtgtttggatagagccaagcaagcatgt |
51 |
Q |
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| T |
9020889 |
tatctcaaagtgtttggataaagccaagcaagcatgt |
9020853 |
T |
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