View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1486_low_10 (Length: 414)
Name: NF1486_low_10
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_10 |
 | |
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| [»] chr7 (18 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0027 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 18)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 20293320 - 20292907
Alignment:
| Q |
1 |
tgcaaacataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20293320 |
tgcaaacataagcttctgcatatttctggtgtaacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttg |
20293221 |
T |
|
| Q |
101 |
tactggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20293220 |
tactggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctggg |
20293121 |
T |
|
| Q |
201 |
tacaaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20293120 |
tacaaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggtt |
20293021 |
T |
|
| Q |
301 |
gtccatgtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcatttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20293020 |
gtccatgtcactttcatttctttcttctcatcatcccaccgcgtttcatctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcatttt |
20292921 |
T |
|
| Q |
401 |
gtaaagtataatat |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20292920 |
gtaaagtataatat |
20292907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 403
Target Start/End: Original strand, 20169431 - 20169827
Alignment:
| Q |
7 |
cataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactgg |
106 |
Q |
| |
|
|||| |||||||||||| |||| ||| |||| | |||||| ||||||||||||||||||| ||| | | ||||||||||||||||||||||||||| | |
|
|
| T |
20169431 |
cataggcttctgcatatgtctgatgtaacagtcaaaccttcagcaaaatctggaactttaatcatttgtagtttcaaaaacccatcttcctttgtacttg |
20169530 |
T |
|
| Q |
107 |
tggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||| || |||||| |||||||||||||||| |||| |
|
|
| T |
20169531 |
tggttttattgttgaccctttcacactgcaaaggtgtccttcgaacacacccaccggtccagttatgtatattccattgttctatgtttctgggttcaaa |
20169630 |
T |
|
| Q |
207 |
tcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccat |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||||| | ||||||||||||| |||||| || |||||||| |
|
|
| T |
20169631 |
ccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaatgccccacataagtcgtaaacatcacactttgattcccgacttgtccat |
20169730 |
T |
|
| Q |
307 |
gtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcattttgta |
403 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||||| ||||||| ||||| |||| | || | |||||| ||||| |||||||||||||||| |
|
|
| T |
20169731 |
agaacttgcacttctttcttctcatcatcccaccccgtttcttctaattctccttttgaatttaggttatagataaaaaattcatcatcattttgta |
20169827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 20302516 - 20302140
Alignment:
| Q |
7 |
cataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactgg |
106 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| | |
|
|
| T |
20302516 |
cataagcttctgcatatatctggtgtaacagctacaccttctgcaaaatcgggaactttaaccatctgcaatttcaaaaacccatcttcttttgtacttg |
20302417 |
T |
|
| Q |
107 |
tggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | | |||||||||||||||| |||||||| | | || ||||||| | |||||| | || |||| |
|
|
| T |
20302416 |
tggttttattgttgaccctttcacactgcaaagatcttctcctaacacacccactagtccaattgtttctattccattcctgtatgttgattggatcaaa |
20302317 |
T |
|
| Q |
207 |
tcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccat |
306 |
Q |
| |
|
||| |||||||||| || ||||| | |||||||||| |||| ||||||| ||||| || |||||||||||||||||||| |||| || | || || |
|
|
| T |
20302316 |
ccctttcaaacagctgcaaattggcgtgctcaatgaattacaaattgcaaatgccccgcaaataccataaacatcacactccgatttctggctagtgaat |
20302217 |
T |
|
| Q |
307 |
gtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaa |
383 |
Q |
| |
|
| |||| || |||||||||||| |||| ||||||| |||| |||||||||||||||||| |||| | ||||||||| |
|
|
| T |
20302216 |
ttaacttccacttctttcttctcgtcattccaccgcatttcttctaattttccttgtgaattcaggttatagatcaa |
20302140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 20272507 - 20272132
Alignment:
| Q |
7 |
cataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactgg |
106 |
Q |
| |
|
|||| |||||||||||| || ||||| || || |||||| ||||||||||||||||||| | ||| | |||||||| |||||||||||||||||| | |
|
|
| T |
20272507 |
cataggcttctgcatatgtcaggtgtaacgattaaaccttcagcaaaatctggaactttaatcgtctgtagtttcaaaatcccatcttcctttgtacttg |
20272408 |
T |
|
| Q |
107 |
tggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaa |
206 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||||||||| |||||||||||||||| | ||| || | | | ||||||| ||| ||| | ||| |||| |
|
|
| T |
20272407 |
tggttttattgtggaccctttcgcactgcaaaggtgtcttcctaacacacccaccagaccagttgtttattttccattcacgtatatttttaggttcaaa |
20272308 |
T |
|
| Q |
207 |
tcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccat |
306 |
Q |
| |
|
|||| ||| |||||| |||||||||||| || ||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
20272307 |
tcctttcagacagctgcatattggtgaggtcgatgaactacagattgcaaatgcgccacatataccataaacatcacactctgaatctcggcttgtccat |
20272208 |
T |
|
| Q |
307 |
gtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatca |
382 |
Q |
| |
|
|| || | | |||||||||||||||||||||||| |||| |||||| ||| |||||| ||| |||||||||| |
|
|
| T |
20272207 |
gtaacatgaacttctttcttctcatcatcccaccgtttttcttctaatactccatgtgaattcaaatgatagatca |
20272132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 414
Target Start/End: Complemental strand, 20278251 - 20277844
Alignment:
| Q |
7 |
cataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactgg |
106 |
Q |
| |
|
|||| ||||||||| || |||||||| ||||||| | |||| |||||| |||| ||||| ||| ||| |||||||||||| ||||||||||| | | | |
|
|
| T |
20278251 |
cataggcttctgcaaatgtctggtgtaacagctaaagcttcagcaaaagctggtactttcaccgtctgtaatttcaaaaacgcatcttcctttctccgtg |
20278152 |
T |
|
| Q |
107 |
tggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaa |
206 |
Q |
| |
|
||||||||||||| |||| ||||| ||||| || ||||||||||||||||||||||| |||||| | ||||||||| ||||||||| ||| |||| |
|
|
| T |
20278151 |
tggttttattgttatccctactacactgcaaagtggttctcctaacacacccaccggtccagttatgtccattccattcttgtatgtttctaggttcaaa |
20278052 |
T |
|
| Q |
207 |
tcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccat |
306 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||| || |||||||| |
|
|
| T |
20278051 |
tcctctcagacagatacatattggtgagaacaatgaactacagcttgcaaatgccccacatataccgtaaacatcacactccaagtcttggcttgtccat |
20277952 |
T |
|
| Q |
307 |
gtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcattttgtaaag |
406 |
Q |
| |
|
|| || | | |||||| ||||| |||| |||| | ||| | |||||||||||||||||| | || ||| |||||| ||| || |||||||||| || | |
|
|
| T |
20277951 |
gtaacaataacttcttttttctcgtcataccactgtgttgcttctaattttccttgtgaatttaggtgaaagatcacaaagtcctcatcattttctaccg |
20277852 |
T |
|
| Q |
407 |
tataatat |
414 |
Q |
| |
|
|||||||| |
|
|
| T |
20277851 |
tataatat |
20277844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 20300443 - 20300160
Alignment:
| Q |
7 |
cataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactgg |
106 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
20300443 |
cataagcttctgcatatgtctggtgcaacagctacaccttctgcaaattcaggaactttaaccatctgcaatatcaaaaatccatcttcctttgtactgg |
20300344 |
T |
|
| Q |
107 |
tggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaa |
206 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||| |||||||| | | || ||||||||| ||| ||||| |||| |
|
|
| T |
20300343 |
tggttttattgttgaccctttaacactgaaaagctgtcctcctgacacacccaccagtccaattgtttctattccattcttgtatcgacttgggttcaaa |
20300244 |
T |
|
| Q |
207 |
tcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctga |
290 |
Q |
| |
|
| || |||||||| | || |||||||| || | |||||||||||||||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
20300243 |
ttctttcaaacaggtgcaaattggtgaacttagtgaactacagcttgcaaataccccgcatataccataaccatcacactctga |
20300160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 20063905 - 20064269
Alignment:
| Q |
7 |
cataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactgg |
106 |
Q |
| |
|
||||| ||||||||||| || |||||| |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20063905 |
cataaccttctgcatatgtccggtgtctcagctattccacttgcaaaatcaggaactttaaccatcttcaatttcaaaaacccatcttcttttgtact-- |
20064002 |
T |
|
| Q |
107 |
tggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaa |
206 |
Q |
| |
|
| ||| ||||||| | ||| | ||||||||||||||||||||| ||||| || | | || ||||||| | |||| | || ||| |||| |
|
|
| T |
20064003 |
---------ttttg----tttcacatttcaatgatgtcctcctaacacacccacctgtccagttgtttctattccattcctgtatgctcctaggttcaaa |
20064089 |
T |
|
| Q |
207 |
tcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccat |
306 |
Q |
| |
|
|||| |||||||||| |||||||||| | |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||| | |||||| |
|
|
| T |
20064090 |
tcctttcaaacagctgcatattggtgtgttcaatgaactacagcttgcaaatgccccacatgtaccatatacatcacactctgattttcggctagtccat |
20064189 |
T |
|
| Q |
307 |
gtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaa |
386 |
Q |
| |
|
|| |||| || |||||||| |||||||| ||| |||||| |||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
20064190 |
gtaacttgcacttctttctcctcatcattccaagacgtttcttctaattttccttgtgaattaagcttatagatcaaaaa |
20064269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 381
Target Start/End: Complemental strand, 20242308 - 20241931
Alignment:
| Q |
4 |
aaacataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtac |
103 |
Q |
| |
|
||||||||| |||||||| | || ||||| || |||| |||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||| ||| |
|
|
| T |
20242308 |
aaacataagattctgcatgtgtcaggtgtaactgctaaaccttcagcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttctac |
20242209 |
T |
|
| Q |
104 |
tggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtac |
203 |
Q |
| |
|
| |||||||||||| ||||||||| |||| ||||||| || |||||||||||| || ||||| || | | |||||||||| | ||||||||| | |
|
|
| T |
20242208 |
ttgtggttttattggtgacccttttacacagcaaaggtctctgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttc |
20242109 |
T |
|
| Q |
204 |
aaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtc |
303 |
Q |
| |
|
||||||| ||||||| || || | |||||||||||||||| ||||||||| ||| | ||||||| ||||||||||||||| |||| | | || || || |
|
|
| T |
20242108 |
aaatcctttcaaacaactgcaaactggtgagctcaatgaattacagcttgtaaaatctccacatagaccataaacatcacattctgcgttttggcttttc |
20242009 |
T |
|
| Q |
304 |
catgtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatc |
381 |
Q |
| |
|
||| |||||||||||||||| |||| ||||||||||| | ||| || ||| |||||| |||| |||| ||||||||| |
|
|
| T |
20242008 |
catctcactttcatttctttattctgatcatcccaccacattttttcaaatattccttttgaattcaggtgatagatc |
20241931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 7 - 400
Target Start/End: Complemental strand, 20282830 - 20282436
Alignment:
| Q |
7 |
cataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactg- |
105 |
Q |
| |
|
|||| ||||||||| || |||||||| ||||||| | |||| |||||| | || ||||| ||||||| | ||| ||||| | || ||||||| | ||| |
|
|
| T |
20282830 |
cataggcttctgcaaatgtctggtgtaacagctaaagcttcagcaaaagccggtactttcaccatctgtagtttgaaaaagc-atattcctttct-ctgt |
20282733 |
T |
|
| Q |
106 |
gtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaa |
205 |
Q |
| |
|
|||||||||||||| || | |||||| |||||| || ||||||||||||||||||||||| |||||| || ||||||||| ||||||||| ||| ||| |
|
|
| T |
20282732 |
gtggttttattgttagccttgccacactgcaaaggggttctcctaacacacccaccggtccagttatgtatattccattcttgtatgtttctaggttcaa |
20282633 |
T |
|
| Q |
206 |
atcctctcaaacagc--tacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtc |
303 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| ||| || || || |
|
|
| T |
20282632 |
atcctctcagacagagatacatattggtgagaccaatgaattacagcttgcaaatgccccacatataccataagcatcacactctgagtcttggcttctc |
20282533 |
T |
|
| Q |
304 |
catgtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcatttt |
400 |
Q |
| |
|
||||| || | | |||||||||||| ||||||||||| |||| || ||||||||||||||| | || |||||||||| ||| || |||| ||||| |
|
|
| T |
20282532 |
catgtaacaataacttctttcttctcctcatcccaccgtctttcttcaaattttccttgtgaattgaggtgatagatcataaagtcctcataatttt |
20282436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 20287941 - 20287673
Alignment:
| Q |
12 |
gcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctt---tgtactggtg |
108 |
Q |
| |
|
|||||| ||||| |||||||| | ||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
20287941 |
gcttctacatatgtctggtgtaagtgctgaaccttgtgcaaaatcaggaactttaaccatcttcaatttcaaaaatccatcttccttctttgtacttgtg |
20287842 |
T |
|
| Q |
109 |
gttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatc |
208 |
Q |
| |
|
|| ||||| |||||||||||||||| |||| || |||| |||||||||||||| ||||| || ||| || |||| || | | |||| |||||| |||||| |
|
|
| T |
20287841 |
gtgttattattgaccctttcacactgcaaaagtatccttctaacacacccaccagtccagttgtgtctattccactcctgtttgttcctgggttcaaatc |
20287742 |
T |
|
| Q |
209 |
ctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaa |
277 |
Q |
| |
|
|||||||||| || ||||||||| | ||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
20287741 |
ctctcaaacaactgcatattggtaacttcaatgaactacagcttgcgaatgccccacatataccataaa |
20287673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 3 - 382
Target Start/End: Complemental strand, 20230359 - 20229980
Alignment:
| Q |
3 |
caaacataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgta |
102 |
Q |
| |
|
|||||||||| |||||||| | || |||||| | ||| |||||| ||||||||||||||||||||||||| | |||||||||||| ||||||||| || |
|
|
| T |
20230359 |
caaacataagattctgcatctgtcaggtgtcccttctaaaccttcagcaaaatctggaactttaaccatctgtagtttcaaaaacccgtcttcctttcta |
20230260 |
T |
|
| Q |
103 |
ctggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggta |
202 |
Q |
| |
|
| |||||||||||| || ||||| ||||| ||| ||| ||| |||||||||||| || ||||| || | | || ||||||| | |||||| || |
|
|
| T |
20230259 |
cctgtggttttattgccgatccttttacactgcaatggtttccgcctaacacacccgccagtccagttgtttctattccattcctgtatgttcaccggat |
20230160 |
T |
|
| Q |
203 |
caaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgt |
302 |
Q |
| |
|
|||| ||| |||||||||| || ||||| | |||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||||| | | || || | |
|
|
| T |
20230159 |
caaaccctttcaaacagctgcaaattggcgtgctcaatgaattacagcttgtaaatgccccacatagaccataaacatcacactctgagtattggctttt |
20230060 |
T |
|
| Q |
303 |
ccatgtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatca |
382 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||||| |||| || ||| |||||| |||| |||| |||||||||| |
|
|
| T |
20230059 |
ccatgccaccatcatttctttcttctgatcatcccaccatatttcttccaatattccttctgaattcaggtgatagatca |
20229980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 20090433 - 20090564
Alignment:
| Q |
1 |
tgcaaacataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20090433 |
tgcaaacataagctgctgcatatttctggtgcaacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttg |
20090532 |
T |
|
| Q |
101 |
tactggtggttttattgttgaccctttcacac |
132 |
Q |
| |
|
|| | |||||||| ||||| ||| ||| |||| |
|
|
| T |
20090533 |
tatttgtggttttgttgttaaccttttgacac |
20090564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 381
Target Start/End: Complemental strand, 20262836 - 20262564
Alignment:
| Q |
109 |
gttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatc |
208 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||| ||| |||||||||||| || ||||| || | | |||||||||| | ||||||||| |||||| |
|
|
| T |
20262836 |
gttttattgctgatcctttcacactgcaaaggtctccgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatc |
20262737 |
T |
|
| Q |
209 |
ctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgt |
308 |
Q |
| |
|
|| ||||||| || |||| ||||||||||||||| ||||||||| ||| | ||||| | ||||||||||||||| |||| | | || || ||||||| |
|
|
| T |
20262736 |
ctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctccacagagaccataaacatcacattctgtgttttggcttttccatgt |
20262637 |
T |
|
| Q |
309 |
cactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatc |
381 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||| || ||| ||||||||||| |||| ||||||||| |
|
|
| T |
20262636 |
cactttcatttctttattcttatcatcccaccatatttcttcgaatattccttgtgaattcaggtgatagatc |
20262564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 138 - 284
Target Start/End: Complemental strand, 19937574 - 19937428
Alignment:
| Q |
138 |
aggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctc |
237 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||| ||||||| ||| |||| || || |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
19937574 |
aggtgtcctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctt |
19937475 |
T |
|
| Q |
238 |
aatgaactacagcttgcaaaggccccacatataccataaacatcaca |
284 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
19937474 |
tgtgaattacagcttgcaaaatgtccacatacaccataaacatcaca |
19937428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 138 - 284
Target Start/End: Complemental strand, 19968713 - 19968567
Alignment:
| Q |
138 |
aggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctc |
237 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||| ||||||| ||| |||| || || |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
19968713 |
aggtgtcctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctt |
19968614 |
T |
|
| Q |
238 |
aatgaactacagcttgcaaaggccccacatataccataaacatcaca |
284 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
19968613 |
tgtgaattacagcttgcaaaatgtccacatacaccataaacatcaca |
19968567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 382
Target Start/End: Original strand, 20090586 - 20090765
Alignment:
| Q |
203 |
caaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgt |
302 |
Q |
| |
|
|||||||||||||||| | ||||| |||||| ||||| || |||| ||||||| |||||||| || |||||| ||| ||| ||| | | || |||| |
|
|
| T |
20090586 |
caaatcctctcaaacaaatgcatatcggtgagttcaattaattacacgttgcaaatgccccacaaatgccataacgatcgtactatgacttttggcttgt |
20090685 |
T |
|
| Q |
303 |
ccatgtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatca |
382 |
Q |
| |
|
|||||| ||| || || |||||| ||||||||||||| ||||| |||||| ||||||||||| |||| |||||||||| |
|
|
| T |
20090686 |
ccatgtaactagcacttatttcttgtcatcatcccaccatgtttcttctaatcttccttgtgaattcaggtgatagatca |
20090765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 47602086 - 47602182
Alignment:
| Q |
138 |
aggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgag |
234 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||| || |||||| ||| |||| || ||| |||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
47602086 |
aggtgtcctcctaacacacccaccagtccatttttgtctattccatttctctttgttccttggttcaaaccctttcaaatagctacatattagtgag |
47602182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 20262927 - 20262841
Alignment:
| Q |
3 |
caaacataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaaccc |
89 |
Q |
| |
|
|||||||||| || ||||| | || |||| || |||| |||||| ||||||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
20262927 |
caaacataagattttgcatttgtcaggtgcaactgctaaaccttcagcaaaatctggaactttaaccatctgtagtttgaaaaaccc |
20262841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 40820521 - 40820939
Alignment:
| Q |
1 |
tgcaaacataagcttctgcatatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttg |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||||| |||| | ||||||||||||||||| |||||||| |
|
|
| T |
40820521 |
tgcagacataagcttctgcatatgtctggtgtaacagctacaccttctgcaaattctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttg |
40820620 |
T |
|
| Q |
101 |
tactggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctggg |
200 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40820621 |
tactcgtggttttattgctgatcctttcacactccaaaggtgtcctcctaacacaccgacccgtccaattatgtatactccattcttctatgtttctggg |
40820720 |
T |
|
| Q |
201 |
tacaaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggtt |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||| || |
|
|
| T |
40820721 |
tacaaatcctctaaaacagctacatattggcgagctcaataaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggctt |
40820820 |
T |
|
| Q |
301 |
gtc-----catgtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatc |
395 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || ||||||||||||| ||| ||||| |
|
|
| T |
40820821 |
gtccatgtcatgtcactttcatttctttcttctcatcatcccatcgcgtttcatctaattttccttgtgatgttaggtgatagatcaaaatctcctcatc |
40820920 |
T |
|
| Q |
396 |
attttgtaaagtataatat |
414 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40820921 |
attttgtaaagtataatat |
40820939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 40825207 - 40825472
Alignment:
| Q |
19 |
catatttctggtgtcacagctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgt |
118 |
Q |
| |
|
||||| |||||||| || ||| || || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || || ||||| | |
|
|
| T |
40825207 |
catatgtctggtgtaactgctgaactttgtgcaaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtacttgttgtcttattat |
40825306 |
T |
|
| Q |
119 |
tgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaaca |
218 |
Q |
| |
|
||||| ||||||||| |||| ||||||| |||||||||||||| ||||| || ||| || |||| || | | |||| |||||| |||||||||||||||| |
|
|
| T |
40825307 |
tgaccttttcacactgcaaaagtgtccttctaacacacccacctgtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaaca |
40825406 |
T |
|
| Q |
219 |
gctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcaca |
284 |
Q |
| |
|
|| ||||| ||| | |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
40825407 |
actgcatatcggtaacttcaatgaactacagcttgaaaatgccccacatataccataaacgtcaca |
40825472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 134894 - 134795
Alignment:
| Q |
238 |
aatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatccc |
337 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||| || |||| || |||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
134894 |
aatgaactacaacttgcaaatactccacatataccataaa-at-acaccctaattctcaacttgtccatgtcactttcgtttctttcttctcatcatccc |
134797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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