View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_11 (Length: 404)
Name: NF1486_low_11
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 37 - 276
Target Start/End: Complemental strand, 37123167 - 37122927
Alignment:
| Q |
37 |
atgagttgattagtctttgtttggcaaacatgagttgataattccaaatgtggaattccttnnnnnnnntaaaa-ttctaaacgtttatttaagaatatt |
135 |
Q |
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| T |
37123167 |
atgagttgataattctttgtttggcaaacatgagttgataattccaaatgttgaattcctttaaaaaaataaaaattctaaacgtttatttaagaatatt |
37123068 |
T |
|
| Q |
136 |
ttttctcagcaattaaattaggttcactaagcttaattgagtgatattgcataatatatgttgtggctgagattcaaatcttaaataccctatttctcta |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37123067 |
ttttctcagcaattaaattaggttcactaagcttaactgagtgatattgcataatatatgttgttgctgagattcaaatcttaaataccctatttctcta |
37122968 |
T |
|
| Q |
236 |
cctttagaaatgtgtgagctacaaccactagattacttgat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37122967 |
tctttagaaatgtgtgagctacaaccactagattacttgat |
37122927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 197001 - 196896
Alignment:
| Q |
285 |
tccgtcatttacctcagtttttcaacaaattttgatgcctaagattatgagtcacgatgtcataatcatccggttcctatattgataacacaactcaact |
384 |
Q |
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| T |
197001 |
tccgtcatttacctcggtttttcaacaaattttgatgcctaagattatgagtcacgatgtcataatcatccggttcctatattgata--acaactcaact |
196904 |
T |
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| Q |
385 |
ttcatttc |
392 |
Q |
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|||||||| |
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| T |
196903 |
ttcatttc |
196896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 311838 - 311733
Alignment:
| Q |
285 |
tccgtcatttacctcagtttttcaacaaattttgatgcctaagattatgagtcacgatgtcataatcatccggttcctatattgataacacaactcaact |
384 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
311838 |
tccgtcatttacctcggtttttcaacaaattttgatgcctaagattatgagtcacgatgtcataatcatccggttcctatattgata--acaactcaact |
311741 |
T |
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| Q |
385 |
ttcatttc |
392 |
Q |
| |
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|||||||| |
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| T |
311740 |
ttcatttc |
311733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 37112721 - 37112689
Alignment:
| Q |
125 |
ttaagaatattttttctcagcaattaaattagg |
157 |
Q |
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|||| |||||||||||||||||||||||||||| |
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|
| T |
37112721 |
ttaaaaatattttttctcagcaattaaattagg |
37112689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 28800014 - 28799968
Alignment:
| Q |
229 |
ttctctacctttagaaatgtgtgagctacaaccactagattacttga |
275 |
Q |
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|||||||| |||| ||||||||||||| ||||||||||| ||||||| |
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| T |
28800014 |
ttctctacatttaaaaatgtgtgagctccaaccactagactacttga |
28799968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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