View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_12 (Length: 382)
Name: NF1486_low_12
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 151 - 362
Target Start/End: Complemental strand, 33411244 - 33411034
Alignment:
| Q |
151 |
caaatttggatggccaaagaactataattatgtatatattttgtgtgtgatggttttggtgattggaaagccactttagaacataattctaatcaagtta |
250 |
Q |
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| T |
33411244 |
caaatttggatggccaaagaactataattatgtatatattttgtgtgtgatggttttggtgactggaaagccactttagaacataattctaatcaagtta |
33411145 |
T |
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| Q |
251 |
gttagagtaatccattccagtgtgtgatcatttgtccagtgcagccatattgttattgtttttgaattttgcgaattcacatagtaggctttgctgaaaa |
350 |
Q |
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| T |
33411144 |
gttagaggaatccattccagtgtgtgatcatttgtccagtgcagccatattgttattgtttttgaattttgagaattcacatagtaggc-ttgctgaaaa |
33411046 |
T |
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| Q |
351 |
tcatgaatttag |
362 |
Q |
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|||||||||||| |
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| T |
33411045 |
tcatgaatttag |
33411034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 33411371 - 33411237
Alignment:
| Q |
1 |
gctgaagtttcggattctatagacatgcttgccaatgaactgaaggaaaagaaagaggctaaccatgtgaaccttatagagtaagtgattggatctatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33411371 |
gctgaagtttcggattctatagacatgcttgccaatgaactgaaggaaaagaaagaggctaaccatgtgaaccttatagagtaagtgattggatctatta |
33411272 |
T |
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| Q |
101 |
ggaagaatgtttatgatcaaaaaattccaaatttg |
135 |
Q |
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| T |
33411271 |
ggaagaatgtttatgatcaaaaaattccaaatttg |
33411237 |
T |
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