View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_13 (Length: 375)
Name: NF1486_low_13
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_13 |
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| [»] scaffold2134 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37337574 - 37337811
Alignment:
| Q |
1 |
atgcaatttcagttccctatgattgcttgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgtactgaacagtatcatttgcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37337574 |
atgcaatttcagttccctatgattgcttgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgcactgaacagtatcatttgcct |
37337673 |
T |
|
| Q |
101 |
tattccaaacgaaatcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37337674 |
tattccaaacgaaatcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcaca |
37337773 |
T |
|
| Q |
201 |
ggtatataacatctgtcatcattagaatgctttcccta |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
37337774 |
tgtatataacatctgtcatcattagaatgctttcccta |
37337811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11300603 - 11300361
Alignment:
| Q |
1 |
atgcaatttcagttccctatgattgcttgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgtactgaacagtatcatttgcct |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
11300603 |
atgcaatttcggttccctatgattgcttgaactccatctatttcctatgtccattctggcactatatatatgtgttttcactgaacagtttcatttgcct |
11300504 |
T |
|
| Q |
101 |
t-----attccaaacgaaatcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcc |
195 |
Q |
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| T |
11300503 |
tgccttattccaaacgaaatcctgagaaaatcaaaacttcacctccctatttcaagcatggccgattgttctctcactgcattgctctcctaccattgcc |
11300404 |
T |
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| Q |
196 |
tcacaggtatataacatctgtcatcattagaatgctttcccta |
238 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||| |
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| T |
11300403 |
tcacgggtatataacatacgtcatcattagaatgctttcccta |
11300361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 37337880 - 37337938
Alignment:
| Q |
307 |
gtaggaccattgagccgtaacccatccacataattttacagaactatcaaccgcctttg |
365 |
Q |
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| T |
37337880 |
gtaggaccattgagccgtaacccatccacataattttacagaactatcaactgcctttg |
37337938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 11300292 - 11300236
Alignment:
| Q |
307 |
gtaggaccattgagccgtaacccatccacataattttacagaactatcaaccgcctt |
363 |
Q |
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||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
11300292 |
gtaggacttttgagctgtaacccatccacagaattttacagaactatcaaccgcctt |
11300236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15296396 - 15296633
Alignment:
| Q |
1 |
atgcaatttcagttccctatgattgcttgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgtactgaacagtatcatttgcct |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||| |||||||||| |
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| T |
15296396 |
atgcaatttcggttccctatgattgcttgaactccatctatttcctatgtccattctggcactatatctatgtgtttgcactgaacagtttcatttgcct |
15296495 |
T |
|
| Q |
101 |
tattccaaacgaaatcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
15296496 |
tattccaaacgaaatcatgagaaaatcaaaacttcacctccctatttcaagcatgttcgatcgtcctctcactgcatcgctctcctaccattgcctcaca |
15296595 |
T |
|
| Q |
201 |
ggtatataacatctgtcatcattagaatgctttcccta |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
15296596 |
ggtatataacatctgtcatcattagaatgctttcccta |
15296633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 15296724 - 15296766
Alignment:
| Q |
321 |
ccgtaacccatccacataattttacagaactatcaaccgcctt |
363 |
Q |
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| T |
15296724 |
ccgtaacccatcaacataattttacagaactatcaaccgcctt |
15296766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 47968392 - 47968274
Alignment:
| Q |
120 |
agaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacaggtatataacatctgtcat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47968392 |
agaaaatcaaaacttcacctccctatttcaagcatggctgatcgtcctctcggtgcattgctctcctaccattgcctcacaggtatataacatctgtcat |
47968293 |
T |
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| Q |
220 |
cattagaatgctttcccta |
238 |
Q |
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|||||| |||| ||||||| |
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| T |
47968292 |
cattaggatgccttcccta |
47968274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 47968204 - 47968148
Alignment:
| Q |
307 |
gtaggaccattgagccgtaacccatccacataattttacagaactatcaaccgcctt |
363 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47968204 |
gtaggacctttgagccgtaacccatccacataattttacagaactatcaaccgcctt |
47968148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 44508872 - 44509072
Alignment:
| Q |
14 |
tccctatgattgcttgaactccatctatttcctatgtccattctagcactatatatgtgtgtttgtactgaacagtatcatttgccttattccaaacgaa |
113 |
Q |
| |
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||||||||||| || ||||||||||||||||| ||| ||||| | ||| |||||| |||||| |||||| |||| ||||||||||||||| || |
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| T |
44508872 |
tccctatgattactggaactccatctatttcccatgcccatttt-gcagcatatatatgtgttatcactgaaatcgctcatctgccttattccaaacaaa |
44508970 |
T |
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| Q |
114 |
atcatgagaaaatcaaaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcacaggtatataacatc |
213 |
Q |
| |
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|| ||||| || |||||||||||||||| | |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| |||||||| || |
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| T |
44508971 |
attccgagaacataaaaacttcacctccctgtatcaagcatggccgatcgtcctctcactgctttgctctcctaccattgcctcacagatatataacctc |
44509070 |
T |
|
| Q |
214 |
tg |
215 |
Q |
| |
|
|| |
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|
| T |
44509071 |
tg |
44509072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 23828780 - 23828850
Alignment:
| Q |
129 |
aaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctaccattgcctcac |
199 |
Q |
| |
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|||||| || |||||||||||||||||| | ||||||||| || |||||||||||||||| ||| ||||| |
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| T |
23828780 |
aaacttaacttccctatttcaagcatggccaatcgtcctcccaccgcattgctctcctacctttgtctcac |
23828850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2134 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2134
Description:
Target: scaffold2134; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 128 - 188
Alignment:
| Q |
129 |
aaacttcacctccctatttcaagcatggtcgatcgtcctctcaatgcattgctctcctacc |
189 |
Q |
| |
|
|||||| || |||||||||||| ||||| |||||| ||||||| ||| |||||||||||| |
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|
| T |
128 |
aaactttacttccctatttcaaccatggacgatcgccctctcaccgcactgctctcctacc |
188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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