View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1486_low_14 (Length: 353)

Name: NF1486_low_14
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1486_low_14
NF1486_low_14
[»] chr8 (1 HSPs)
chr8 (7-345)||(31734764-31735102)
[»] chr1 (6 HSPs)
chr1 (30-177)||(6768700-6768844)
chr1 (257-345)||(6768955-6769042)
chr1 (264-303)||(50004260-50004299)
chr1 (264-338)||(30210197-30210270)
chr1 (312-346)||(44108964-44108998)
chr1 (312-341)||(9381922-9381951)
[»] chr2 (5 HSPs)
chr2 (32-177)||(6458027-6458169)
chr2 (257-345)||(6458280-6458367)
chr2 (266-346)||(40053809-40053888)
chr2 (260-346)||(12027364-12027449)
chr2 (264-302)||(18666071-18666109)
[»] chr4 (6 HSPs)
chr4 (32-177)||(2183737-2183879)
chr4 (7-177)||(45413273-45413432)
chr4 (257-345)||(2183990-2184077)
chr4 (257-345)||(45413075-45413162)
chr4 (264-335)||(35075167-35075237)
chr4 (264-336)||(34667134-34667206)
[»] chr3 (1 HSPs)
chr3 (258-346)||(40417654-40417741)
[»] chr5 (1 HSPs)
chr5 (265-336)||(7010112-7010182)
[»] scaffold1822 (1 HSPs)
scaffold1822 (265-345)||(537-616)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 31734764 - 31735102
Alignment:
Q  7 aatttgatattattggattatgctcttttctagtacaattgcaaaacaaaatttgtaactttattttgtgaatcgaagaataaaaggatgttttcatcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31734764 aatttgatattattggattatgctcttttctagtacaattgcaaaacaaaatttgtaactttattttgtgaatcgaagaataaaaggatgttttcatcaa 31734863  T
Q  107 ttattggaatcattagtggcatcagtttgctttttattgttcttggtacctttgtggcatggatttgcgaacgtgctgccattggagttttttatacgtt 206  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31734864 ttattggaatcattagtggca---------tttttattgttcttggtacctttgtggcatggatttgcgaacgtgctgccattggagttttttatacgtt 31734954  T
Q  207 tcttaattttagtttttgtttggcttaccaaacacattaaaaa-----tctgt-----tactattttttatcatgtatgcaccaaacatgtgataggata 296  Q
    |||||||||||||||||||||||||||||||||||||||||||     | |||     || || | ||||||||||||||||||||||||||||||||||    
T  31734955 tcttaattttagtttttgtttggcttaccaaacacattaaaaaaaaactatgttttcctattagtatttatcatgtatgcaccaaacatgtgataggata 31735054  T
Q  297 aatgttactaaagtaactatcatatcatatccttatccatcttcttatc 345  Q
    | ||||| | | |||||||||||||||||||||||||||||||||||||    
T  31735055 agtgtta-tgatgtaactatcatatcatatccttatccatcttcttatc 31735102  T

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Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 6768700 - 6768844
Alignment:
Q  30 tcttttctagtacaattgcaaaacaaaatttgtaactttattttgtgaatcgaagaataaaaggatgttttcatcaattattggaatcattagtggcatc 129  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||| ||||||||| |   ||||||||||||    
T  6768700 tcttttctggtacaattgcaaaacaaaatttttaactttattttatgaatcgatgaataaaaggacgttttcaccaattattgaa---attagtggcatc 6768796  T
Q  130 agtttgctttttattgttcttggtacctttgtggcatggatttgcgaa 177  Q
     |||||||||| | |||| ||||||||||||||||| |||||||||||    
T  6768797 ggtttgcttttgaatgttattggtacctttgtggcagggatttgcgaa 6768844  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 6768955 - 6769042
Alignment:
Q  257 ctattttttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatcttcttatc 345  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||| | |||| |||||||||||||||| |||||||||||||||||    
T  6768955 ctattgtttatcatgtgtgcaccaaacatgtgataggataaacgtta-tcaagtcactatcatatcatatctttatccatcttcttatc 6769042  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 50004299 - 50004260
Alignment:
Q  264 ttatcatgtatgcaccaaacatgtgataggataaatgtta 303  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  50004299 ttatcatgtgtgcaccaaacatatgataggataaatgtta 50004260  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 30210197 - 30210270
Alignment:
Q  264 ttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatct 338  Q
    ||||||||| || | |||||| |||||||||||||||||| | | || | |||||||||||||| ||||||||||    
T  30210197 ttatcatgtgtgtatcaaacaagtgataggataaatgtta-tcatgtcattatcatatcatatctttatccatct 30210270  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 44108964 - 44108998
Alignment:
Q  312 actatcatatcatatccttatccatcttcttatca 346  Q
    |||||||||||||||||||||||| ||||||||||    
T  44108964 actatcatatcatatccttatccaacttcttatca 44108998  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 341
Target Start/End: Complemental strand, 9381951 - 9381922
Alignment:
Q  312 actatcatatcatatccttatccatcttct 341  Q
    ||||||||||||||||||||||||||||||    
T  9381951 actatcatatcatatccttatccatcttct 9381922  T

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Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 6458027 - 6458169
Alignment:
Q  32 ttttctagtacaattgcaaaacaaaatttgtaactttattttgtgaatcgaagaataaaaggatgttttcatcaattattggaatcattagtggcatcag 131  Q
    |||||| ||||||||||||||||||| || |||||||||||| |||||||| ||||||||||| ||||||| ||||||||| |   ||||||||||||||    
T  6458027 ttttctggtacaattgcaaaacaaaaattttaactttattttatgaatcgatgaataaaaggacgttttcaccaattattgaa---attagtggcatcag 6458123  T
Q  132 tttgctttttattgttcttggtacctttgtggcatggatttgcgaa 177  Q
    ||||||||| | |||| |||||||||||| ||||||||||||||||    
T  6458124 tttgcttttgaatgttattggtacctttgcggcatggatttgcgaa 6458169  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 6458280 - 6458367
Alignment:
Q  257 ctattttttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatcttcttatc 345  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  6458280 ctattatttatcatgtgtgcaccaaacatgtgataggataaatgtta-taaagtcattatcatatcatatccttatccatcttcttatc 6458367  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 40053888 - 40053809
Alignment:
Q  266 atcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatcttcttatca 346  Q
    ||||||| |||||||||||||||||||||||| ||||| |   ||  |||||||||||||||||||||||  |||||||||    
T  40053888 atcatgtgtgcaccaaacatgtgataggataattgtta-tcttgttgctatcatatcatatccttatccagtttcttatca 40053809  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 12027364 - 12027449
Alignment:
Q  260 ttttttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatcttcttatca 346  Q
    ||||||||||||| ||| | |||||  ||| | ||||||||||| || | | |||||||||||||||||||||||| ||||||||||    
T  12027364 ttttttatcatgtgtgcccaaaacacatgacatgataaatgttattata-tcactatcatatcatatccttatccagcttcttatca 12027449  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 18666071 - 18666109
Alignment:
Q  264 ttatcatgtatgcaccaaacatgtgataggataaatgtt 302  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  18666071 ttatcatgtgtgcatcaaacatgtgataggataaatgtt 18666109  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 2183737 - 2183879
Alignment:
Q  32 ttttctagtacaattgcaaaacaaaatttgtaactttattttgtgaatcgaagaataaaaggatgttttcatcaattattggaatcattagtggcatcag 131  Q
    |||||| ||||||||||||||||||| || |||||||||||| |||||| | ||||||||||| ||||||| ||||||||| |   |||||| ||||| |    
T  2183737 ttttctggtacaattgcaaaacaaaaattttaactttattttatgaatcaatgaataaaaggacgttttcaccaattattgaa---attagtagcatcgg 2183833  T
Q  132 tttgctttttattgttcttggtacctttgtggcatggatttgcgaa 177  Q
    ||||||||| | |||| || ||||||||||||||||||||||||||    
T  2183834 tttgcttttgaatgttatttgtacctttgtggcatggatttgcgaa 2183879  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 45413432 - 45413273
Alignment:
Q  7 aatttgatattattggattatgctcttttctagtacaattgcaaaacaa-aatttgtaactttattttgtgaatcgaagaataaaaggatgttttcatca 105  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||   ||| ||||||||||||||||||||  |||||||         ||| ||    
T  45413432 aatttgatattattggattatgcccttttctggtacaattgcaaaacaattttttttaactttattttgtgaatcggtgaataaa---------tcacca 45413342  T
Q  106 attattggaatcattagtggcatcagtttgctttttattgttcttggtacctttgtggcatggatttgcgaa 177  Q
    ||||||| |   |||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||    
T  45413341 attattgaa---attagtggcatcggtttgcttttgaatgttattggtacctttgtggcatggatttgcgaa 45413273  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 2183990 - 2184077
Alignment:
Q  257 ctattttttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatcttcttatc 345  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||||| ||| || | ||||||||||||||||||||||||||||||||    
T  2183990 ctattatttatcatgtgtgcaccaaacatgtgataagataaatgtta-taaggtcattatcatatcatatccttatccatcttcttatc 2184077  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 45413162 - 45413075
Alignment:
Q  257 ctattttttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatcttcttatc 345  Q
    ||||| |||||||||| |||| ||||||| ||||| ||||||||||| | | || |||||||||| ||||| |||||||||||||||||    
T  45413162 ctattatttatcatgtgtgcatcaaacatatgataagataaatgtta-tcaggtcactatcatattatatctttatccatcttcttatc 45413075  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 35075167 - 35075237
Alignment:
Q  264 ttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatcca 335  Q
    ||||||||| || ||||||||||| ||||||||||||||| | | || ||||||||||| |||| |||||||    
T  35075167 ttatcatgtgtgtaccaaacatgtaataggataaatgtta-ttatgtcactatcatatcctatcattatcca 35075237  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 34667134 - 34667206
Alignment:
Q  264 ttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccat 336  Q
    ||||||||| |||||||||||| ||| ||||||||| ||  | | || ||||||||||| |||| ||||||||    
T  34667134 ttatcatgtttgcaccaaacatatgagaggataaatatttatcatgtcactatcatatcctatctttatccat 34667206  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 40417654 - 40417741
Alignment:
Q  258 tattttttatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatcttcttatca 346  Q
    ||||| ||||||||  |||||||||||| ||||| ||||||||||| | | || ||| ||||||| |||||||||||| ||||||||||    
T  40417654 tatttcttatcatgcgtgcaccaaacatatgatatgataaatgtta-tcatgtcactgtcatatcctatccttatccagcttcttatca 40417741  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 7010182 - 7010112
Alignment:
Q  265 tatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccat 336  Q
    |||||||| ||||||||||| |||||||||||||||||| | | || ||||||||||  |||||||||||||    
T  7010182 tatcatgtgtgcaccaaacaggtgataggataaatgtta-tcatgtcactatcatattctatccttatccat 7010112  T

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Target: scaffold1822 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 616 - 537
Alignment:
Q  265 tatcatgtatgcaccaaacatgtgataggataaatgttactaaagtaactatcatatcatatccttatccatcttcttatc 345  Q
    |||||||| |||||||||||  |||||||||| |||||| | | || |||| |||||| ||||||||||||| || |||||    
T  616 tatcatgtgtgcaccaaacacatgataggatagatgtta-tcatgtcactaccatatcctatccttatccatttttttatc 537  T

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