View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1486_low_15 (Length: 342)
Name: NF1486_low_15
Description: NF1486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1486_low_15 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 35914713 - 35915042
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35914713 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagataatgataaagttagatttatgaggttgacagttatattgcattattagtctt |
35914812 |
T |
|
| Q |
113 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35914813 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtcgatgcaagctgcggaacat |
35914912 |
T |
|
| Q |
213 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaacctctccagccagttgatgaggaaaacataggcatctttagc |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35914913 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgatgaggaaaacataggcatctttagc |
35915012 |
T |
|
| Q |
313 |
ggtggtcttatctcctgaattgtcatagtc |
342 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
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| T |
35915013 |
ggtggacttatctcctgaattgtcatagtc |
35915042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 35921085 - 35921414
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| ||||| | || | ||||| ||||||| ||| ||||||||| ||||||||||| | |
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| T |
35921085 |
catcatcaatccaagcattccctatctgaaatttttttaagtatagataataatgagattagaattatgagattgcgagttatatttcattattagtcat |
35921184 |
T |
|
| Q |
113 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
212 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||| |
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| T |
35921185 |
tcgaagtttgaacaacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtaaagaatagtggatgcaagttgaggaacat |
35921284 |
T |
|
| Q |
213 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaacctctccagccagttgatgaggaaaacataggcatctttagc |
312 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
35921285 |
aatgaccggcataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaagacataggcatctttagc |
35921384 |
T |
|
| Q |
313 |
ggtggtcttatctcctgaattgtcatagtc |
342 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
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| T |
35921385 |
agtggacttatctcctgaattgtcatagtc |
35921414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 35927678 - 35928007
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||| ||||| ||| ||| || ||||| |
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|
| T |
35927678 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataataataaagttagatttatgagattgtgagttacatttcatacttggtctt |
35927777 |
T |
|
| Q |
113 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
212 |
Q |
| |
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| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
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| T |
35927778 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
35927877 |
T |
|
| Q |
213 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaacctctccagccagttgatgaggaaaacataggcatctttagc |
312 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || || | ||| || || |
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| T |
35927878 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
35927977 |
T |
|
| Q |
313 |
ggtggtcttatctcctgaattgtcatagtc |
342 |
Q |
| |
|
|| | ||||||||||| ||||||||||| |
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| T |
35927978 |
agttgatttatctcctgacttgtcatagtc |
35928007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 35940058 - 35940383
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| ||| ||||| ||| |||||||| |||||| ||| | ||||||||||||||||||||| |
|
|
| T |
35940058 |
catcatcaatccaagcattccctaactgaaattttgtat-gtacagataatga---agttagatatatgagattgtgatttatattgcattattagtctt |
35940153 |
T |
|
| Q |
113 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
212 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||| || ||||||| |
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| T |
35940154 |
ttgaagtttgatcaacatacagaaatgcctttgaggttaataatggtgttcttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacat |
35940253 |
T |
|
| Q |
213 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaacctctccagccagttgatgaggaaaacataggcatctttagc |
312 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||| || || |
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| T |
35940254 |
aatgaccagcataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggc |
35940353 |
T |
|
| Q |
313 |
ggtggtcttatctcctgaattgtcatagtc |
342 |
Q |
| |
|
|| | ||||||||||| ||||||||||| |
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| T |
35940354 |
agttgatttatctcctgatttgtcatagtc |
35940383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 35910278 - 35910607
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||||||| ||| ||||| ||| ||| || ||||| |
|
|
| T |
35910278 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
35910377 |
T |
|
| Q |
113 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
212 |
Q |
| |
|
| ||||| ||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| ||||||| || ||||||| |
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|
| T |
35910378 |
ttgaagttggaaaatcatacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacat |
35910477 |
T |
|
| Q |
213 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaacctctccagccagttgatgaggaaaacataggcatctttagc |
312 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||| |||||| ||||||| ||||| || |
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|
| T |
35910478 |
aatgaccagcataactctctccagttatgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggc |
35910577 |
T |
|
| Q |
313 |
ggtggtcttatctcctgaattgtcatagtc |
342 |
Q |
| |
|
|| | |||||||||||| ||||||||||| |
|
|
| T |
35910578 |
agttgacttatctcctgatttgtcatagtc |
35910607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 35934492 - 35934807
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagatattgataaagttagatttatgaggttgacagttatattgcattattagtctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | ||| | ||| | || ||||||| | |||| | | | ||||||||||||||||||||||| |
|
|
| T |
35934492 |
catcatcaatccaagcattccctatctgaaaaatttgaa-gtacaaataatcatgaagttagttatatgtgatagtgagttatattgcattattagtctt |
35934590 |
T |
|
| Q |
113 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtccatgcaagctgcggaacat |
212 |
Q |
| |
|
| ||| |||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||| || |||||||||||| ||||||| || ||||||| |
|
|
| T |
35934591 |
ttgaagattgatcaacatacagatatgcctttgaggttaatgatggttttgttatagagtttatggtggtgaagaatagtggatgcaagttgaggaacat |
35934690 |
T |
|
| Q |
213 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaacctctccagccagttgatgaggaaaacataggcatctttagc |
312 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35934691 |
aatgaccagcataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaaaacataggcatctttagc |
35934790 |
T |
|
| Q |
313 |
ggtggtcttatctcctg |
329 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
35934791 |
agtggacttatctcctg |
35934807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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